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BaseInfo

ncRNA ID	novel_osa_miR3457
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:19271677-19271761 [-]
Reference genome	IRGSP-1.0
Source	SRR2040389
Length	25
Mature sequence(if miRNA)	61 - AUAAACCAACUUCGUACUAGGACGU - 85
Stem-loop(if miRNA)	--      C         C     CG   GA    -AU  UCA   AUAAAC AACUUCGUA UAGGA  UGA  CAUC   GU   U   |||||| ||||||||| |||||  |||  ||||   ||   UAUUUG UUGGAGUAU AUCUU  ACU  GUAG   CA   U UU      A         U     AU   GC    GAU  UAU
Stem-loop sequence	AUAAACCAACUUCGUACUAGGACGUGAGACAUCAUGUUCAUUUAUACUAGGAUGCGUCAUAUUCUAUUAUGAGGUUAGUUUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164032.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   ||*|||||||||||=|||||||||| targets:45   ACAUCCUAGUACGAGGUUGGUUUAU   69 Target Full Sequence	1.5	Sequence 1696 from Patent EP2559767	NA	coding protein	psRNATarget
HI403571.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   ||*|||||||||||=|||||||||| targets:45   ACAUCCUAGUACGAGGUUGGUUUAU   69 Target Full Sequence	1.5	Sequence 1696 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235701.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   ||*|||||||||||=|||||||||| targets:45   ACAUCCUAGUACGAGGUUGGUUUAU   69 Target Full Sequence	1.5	Sequence 1696 from Patent EP2985353	NA	coding protein	psRNATarget
AK063785.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   |=||==*|*||*||||||||||||| targets:322   AUGUUUCAUUAGGAAGUUGGUUUAU   346 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-121-D11, full insert sequence	NA	coding protein	psRNATarget
XM_015772196.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   |=||==*|*||*||||||||||||| targets:1588   AUGUUUCAUUAGGAAGUUGGUUUAU   1612 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable beta-1,3-galactosyltransferase 2 (LOC4328403), transcript variant X2, mRNA	probable beta-1,3-galactosyltransferase 2(LOC4328403)	coding protein	psRNATarget
XM_015772197.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   |=||==*|*||*||||||||||||| targets:1603   AUGUUUCAUUAGGAAGUUGGUUUAU   1627 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable beta-1,3-galactosyltransferase 2 (LOC4328403), transcript variant X3, mRNA	probable beta-1,3-galactosyltransferase 2(LOC4328403)	coding protein	psRNATarget
XM_015772195.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   |=||==*|*||*||||||||||||| targets:1616   AUGUUUCAUUAGGAAGUUGGUUUAU   1640 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable beta-1,3-galactosyltransferase 2 (LOC4328403), transcript variant X1, mRNA	probable beta-1,3-galactosyltransferase 2(LOC4328403)	coding protein	psRNATarget
AK072484.1	ncRNA:25   UGCAGGAUCAUGCUUCAACCAAAUA   1   |=||==*|*||*||||||||||||| targets:2166   AUGUUUCAUUAGGAAGUUGGUUUAU   2190 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023127C09, full insert sequence	NA	coding protein	psRNATarget