Search result

BaseInfo

ncRNA ID novel_osa_miR3456
Species Oryza sativa
Class miRNA
Genome position Chr7:23319742-23319829 [-]
Reference genome IRGSP-1.0
Source SRR2040389
Length 23
Mature sequence(if miRNA) 1 - UUAACCGGGACUAAAGAUCAUUU - 23
Stem-loop(if miRNA) -------------  G     UAGUACCGGUUGGUAAUAACAACCGGAAC
             AU AUCUU                             U
             || |||||
             AG GGCCA                             A
UUUACUAGAAAUC  -     AUUUUUGGGAUGGCCCUAAGAUAGUAGAA
Stem-loop sequence AUGAUCUUUAGUACCGGUUGGUAAUAACAACCGGAACUAAAGAUGAUAGAAUCCCGGUAGGGUUUUUAACCGGGACUAAAGAUCAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK061057.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |||||||||||||||||||||||
targets:244   AAAUGAUCUUUAGUCCCGGUUAA   266

0.0 Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence NA coding protein psRNATarget
AK288424.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  ||||||||||||||||||||||=
targets:2377   AAAUGAUCUUUAGUCCCGGUUAG   2399

1.0 Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence NA coding protein psRNATarget
AK288463.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |||||||||||||||||||||=|
targets:421   AAAUGAUCUUUAGUCCCGGUUGA   443

1.5 Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence NA coding protein psRNATarget
AK288463.1
ncRNA:23   UUUAC-UAGAAAUCAGGGCCAAUU   1
  |=|||-|||||||||||||||||*
targets:638   AGAUGGAUCUUUAGUCCCGGUUAU   661

3.0 Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence NA coding protein psRNATarget
AK288463.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  *=|*|||||||||||||||||==
targets:551   CGAGGAUCUUUAGUCCCGGUUGG   573

2.5 Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence NA coding protein psRNATarget
XM_015779829.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |=|||||=|||||||||||||=|
targets:1587   AGAUGAUUUUUAGUCCCGGUUGA   1609

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA uncharacterized LOC4335182(LOC4335182) coding protein psRNATarget
XM_015779829.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  ||||*||||||||||||||||*|
targets:1645   AAAUCAUCUUUAGUCCCGGUUCA   1667

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA uncharacterized LOC4335182(LOC4335182) coding protein psRNATarget
XM_015779829.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  *=|*|||||||||||||||||==
targets:1696   CGAGGAUCUUUAGUCCCGGUUGG   1718

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA uncharacterized LOC4335182(LOC4335182) coding protein psRNATarget
AK105552.1
ncRNA:23   UUUA-CUAGAAAUCAGGGCCAAUU   1
  ||||-||||||||||||||||||=
targets:1268   AAAUAGAUCUUUAGUCCCGGUUAG   1291

3.0 Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence NA coding protein psRNATarget
XM_015755256.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  *||||||||||||||||||||==
targets:139   UAAUGAUCUUUAGUCCCGGUUGG   161

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA uncharacterized LOC4346665(LOC4346665) coding protein psRNATarget
XM_015774888.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |||||||||*|||||||||||=|
targets:1383   AAAUGAUCUCUAGUCCCGGUUGA   1405

2.5 PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X3, mRNA metacaspase-1(LOC4333012) coding protein psRNATarget
XM_015774887.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |||||||||*|||||||||||=|
targets:1389   AAAUGAUCUCUAGUCCCGGUUGA   1411

2.5 PREDICTED: Oryza sativa Japonica Group metacaspase-1 (LOC4333012), transcript variant X2, mRNA metacaspase-1(LOC4333012) coding protein psRNATarget
AK288859.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |||*|||||||||||||||||=|
targets:2193   AAAAGAUCUUUAGUCCCGGUUGA   2215

1.5 Oryza sativa Japonica Group cDNA, clone: J090076J15, full insert sequence NA coding protein psRNATarget
LQ236416.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  =*||||||||||||||||||||=
targets:38   GCAUGAUCUUUAGUCCCGGUUAG   60

1.0 Sequence 2411 from Patent EP2985353 NA coding protein psRNATarget
HI404286.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  =*||||||||||||||||||||=
targets:38   GCAUGAUCUUUAGUCCCGGUUAG   60

1.0 Sequence 2411 from Patent EP2074227 NA coding protein psRNATarget
JB164747.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  =*||||||||||||||||||||=
targets:38   GCAUGAUCUUUAGUCCCGGUUAG   60

1.0 Sequence 2411 from Patent EP2559767 NA coding protein psRNATarget
AK288405.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |=||*||=|||||||||||||||
targets:2345   AGAUUAUUUUUAGUCCCGGUUAA   2367

2.0 Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence NA coding protein psRNATarget
XM_015790121.1
ncRNA:23   UUU----ACUAGAAAUCAGGGCCAAUU   1
  |||----||||||||||||||||||==
targets:965   AAAGUGCUGAUCUUUAGUCCCGGUUGG   991

2.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA putative disease resistance protein RGA4(LOC107281518) coding protein psRNATarget
AK288734.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |**||||||||||||||||||==
targets:43   AUUUGAUCUUUAGUCCCGGUUGG   65

2.5 Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence NA coding protein psRNATarget
AK288191.1
ncRNA:23   UUU-----ACUAGAAAUCAGGGCCAAUU   1
  =||-----||||||||||||||||||=*
targets:1553   GAACUUUUUGAUCUUUAGUCCCGGUUGU   1580

2.5 Oryza sativa Japonica Group cDNA, clone: J090007A11, full insert sequence NA coding protein psRNATarget
AK288544.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  ****|||||||||||||||||=|
targets:1785   CCUAGAUCUUUAGUCCCGGUUGA   1807

1.5 Oryza sativa Japonica Group cDNA, clone: J090046G24, full insert sequence NA coding protein psRNATarget
AK121178.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  *=|*|||||||||||||||||==
targets:1904   UGACGAUCUUUAGUCCCGGUUGG   1926

2.5 Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence NA coding protein psRNATarget
AK288224.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  ****|||||||||||||||||=|
targets:1256   CUCGGAUCUUUAGUCCCGGUUGA   1278

1.5 Oryza sativa Japonica Group cDNA, clone: J090012B15, full insert sequence NA coding protein psRNATarget
AK065634.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  |||*|*|=||||||||||||||=
targets:1818   AAACGCUUUUUAGUCCCGGUUAG   1840

3.0 Oryza sativa Japonica Group cDNA clone:J013034I10, full insert sequence NA coding protein psRNATarget
XM_015759969.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  ==||*||||||||||||||||*|
targets:1867   GGAUCAUCUUUAGUCCCGGUUCA   1889

2.5 PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA F-box/LRR-repeat protein At3g58930(LOC9269963) coding protein psRNATarget
XM_015759968.1
ncRNA:23   UUUACUAGAAAUCAGGGCCAAUU   1
  ==||*||||||||||||||||*|
targets:3365   GGAUCAUCUUUAGUCCCGGUUCA   3387

2.5 PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA F-box/LRR-repeat protein At3g58930(LOC9269963) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.