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BaseInfo

ncRNA ID	novel_osa_miR3453
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:23382168-23382339 [+]
Reference genome	IRGSP-1.0
Source	SRR2040389;SRR2040403;SRR2857735
Length	22
Mature sequence(if miRNA)	1 - UUUUUAUUUGCACUGUUUGACC - 22
Stem-loop(if miRNA)	--     AUU                          C         -     -   UUAUUUAUUUU     U A    CUU    AU   UUUUU   UGCACUGUUUGACCAUUUGUCUUAUU AAAAAAAUU UGUAA UAU           AUUUG G CUUA   UAUU  C   |||||   |||||||||||||||||||||||||| ||||||||| ||||| |||           ||||| | ||||   ||||   AAAAA   ACGUGACAAACUGGUGAGCAGAAUAA UUUUUUUAA ACGUU AUA           UAAAC C GAAU   AUGA  C UG     -GU                          A         C     U   UCUUUUACUUU     U -    UUU    AA
Stem-loop sequence	UUUUUAUUUGCACUGUUUGACCAUUUGUCUUAUUCAAAAAAAUUUGUAAUAUUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCCAAAGUAUUUUAAGCUCAAAUUUUCAUUUUCUAUAUUUGCACAAUUUUUUUAAAUAAGACGAGUGGUCAAACAGUGCAUGAAAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837645.1	ncRNA:22   CCAGUUUGUCACGUUUAUUUUU   1   |||||||||||||||=|||||* targets:611   GGUCAAACAGUGCAAGUAAAAU   632 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
XM_015782265.1	ncRNA:22   CCAGUUUGUCACGUUUAUUUUU   1   ***||=|||||||||||||||| targets:558   UUACAGACAGUGCAAAUAAAAA   579 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC4337746), mRNA	1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1(LOC4337746)	coding protein	psRNATarget
CT837700.1	ncRNA:22   CCAGUUUGUCACGUUUAUUUUU   1   **|||||*|||*|||||||||| targets:727   CCUCAAAAAGUACAAAUAAAAA   748 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120G20, full insert sequence	NA	coding protein	psRNATarget