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BaseInfo

ncRNA ID	novel_osa_miR3451
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:18760602-18760692 [+]
Reference genome	IRGSP-1.0
Source	SRR2040389
Length	21
Mature sequence(if miRNA)	71 - UUUGUGAACAAUGUUACUAUU - 91
Stem-loop(if miRNA)	--     UG                   U       A      GU   UAGUA  AUUGUUCAUAAAAUUUACA AUCUCUU UAUGGU  U   |||||  ||||||||||||||||||| ||||||| ||||||  A   AUCAU  UAACAAGUGUUUUAAAUGU UAGAGAG AUAUCA  U UU     UG                   U       A      AA
Stem-loop sequence	UAGUAUGAUUGUUCAUAAAAUUUACAUAUCUCUUAUAUGGUGUUAUAAACUAUAAGAGAGAUUUGUAAAUUUUGUGAACAAUGUUACUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236694.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   |=||||||||||||||||||| targets:26   AGUAGUAACAUUGUUCACAAA   46 Target Full Sequence	0.0	Sequence 2689 from Patent EP2985353	NA	coding protein	psRNATarget
JB165025.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   |=||||||||||||||||||| targets:26   AGUAGUAACAUUGUUCACAAA   46 Target Full Sequence	0.0	Sequence 2689 from Patent EP2559767	NA	coding protein	psRNATarget
HI404564.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   |=||||||||||||||||||| targets:26   AGUAGUAACAUUGUUCACAAA   46 Target Full Sequence	0.0	Sequence 2689 from Patent EP2074227	NA	coding protein	psRNATarget
CT831299.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   =||=||||||||||||||||| targets:815   GAUGGUAACAUUGUUCACAAA   835 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget
AK289001.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   =||**|||||||||||||||| targets:29   GAUUUUAACAUUGUUCACAAA   49 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090088H22, full insert sequence	NA	coding protein	psRNATarget
KF240826.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   =|*|||||*|||||||||||| targets:943   GAGAGUAAAAUUGUUCACAAA   963 Target Full Sequence	2.5	Oryza sativa cultivar Swarna type IIB Ca2+ATPase (ACA6) mRNA, complete cds	NA	coding protein	psRNATarget
AK067259.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   =|*|||||*|||||||||||| targets:1129   GAGAGUAAAAUUGUUCACAAA   1149 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095I07, full insert sequence	NA	coding protein	psRNATarget
AK120495.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   =|*|||||*|||||||||||| targets:1090   GAGAGUAAAAUUGUUCACAAA   1110 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013120H18, full insert sequence	NA	coding protein	psRNATarget
XM_015781183.1	ncRNA:21   UUAUCAUUGUAACAAGUGUUU   1   =|*|||||*|||||||||||| targets:1126   GAGAGUAAAAUUGUUCACAAA   1146 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcium-transporting ATPase 8, plasma membrane-type (LOC4336912), mRNA	calcium-transporting ATPase 8, plasma membrane-type(LOC4336912)	coding protein	psRNATarget