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BaseInfo

ncRNA ID	novel_osa_miR3448
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:13404910-13405098 [-]
Reference genome	IRGSP-1.0
Source	SRR2040389;SRR2040409;SRR2040410
Length	20
Mature sequence(if miRNA)	1 - UAGGAAAAAAGUCAAACGAC - 20
Stem-loop(if miRNA)	--CA                     A                      --G    CAACAUUUAAAAUACCAAACUAGUUUCAUAAAAUAUAACA     UUUGACUUUUUUCCUAGUCAA UUUGACCAAGUUUAUAGAAAAA   UUAA                                        U     ||||||||||||||||||||| ||||||||||||||||||||||   ||||                                        U     AAACUGAAAAAAGGAUCAGUU AAACUGGUUUAAAUAUCUUUUU   UGAU                                        G CAGC                     C                      AUG    CAUAAAACUUGUGUUUUGUUUGUAUAAUAGUUUUAUAUGA
Stem-loop sequence	CAUUUGACUUUUUUCCUAGUCAAAUUUGACCAAGUUUAUAGAAAAAGUUAACAACAUUUAAAAUACCAAACUAGUUUCAUAAAAUAUAACAUUGAGUAUAUUUUGAUAAUAUGUUUGUUUUGUGUUCAAAAUACUAGUGUAUUUUUCUAUAAAUUUGGUCAAACUUGACUAGGAAAAAAGUCAAACGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK120213.1	ncRNA:20   CAGCAAACUGAAAAAAGGAU   1   |||||||||||||||||=|| targets:1050   GUCGUUUGACUUUUUUCUUA   1069 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013039G14, full insert sequence	NA	coding protein	psRNATarget
AK240728.1	ncRNA:20   CAGCAAACUGAAAA-AAGGAU   1   ||||||||||||||-|||||| targets:1068   GUCGUUUGACUUUUCUUCCUA   1088 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J043029C11, full insert sequence	NA	coding protein	psRNATarget
AK288412.1	ncRNA:20   CAGCAAACUGAAAAAAGGAU   1   |*|||||||||||||||||| targets:2325   GCCGUUUGACUUUUUUCCUA   2344 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090030N09, full insert sequence	NA	coding protein	psRNATarget
AK288707.1	ncRNA:20   CAGCAAACUGAAAAAAGGAU   1   |*|||||||||||||||||| targets:871   GCCGUUUGACUUUUUUCCUA   890 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090061M09, full insert sequence	NA	coding protein	psRNATarget
AK288897.1	ncRNA:20   CAGC-AAACUGAAAAAAGGAU   1   ||=|-|||||||||||||||| targets:1331   GUUGAUUUGACUUUUUUCCUA   1351 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090080G08, full insert sequence	NA	coding protein	psRNATarget
AK073029.1	ncRNA:20   CAGC-AAACUGAAAAAAGGAU   1   *|||-|||||||||||||||| targets:1579   AUCGCUUUGACUUUUUUCCUA   1599 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023146M03, full insert sequence	NA	coding protein	psRNATarget
AK289190.1	ncRNA:20   CAGCAAACUGAAAA-AAGGAU   1   *|||||||||||||-|||||| targets:1074   AUCGUUUGACUUUUAUUCCUA   1094 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J100038P15, full insert sequence	NA	coding protein	psRNATarget
AK109666.1	ncRNA:20   CAGCAAACUGAAAA-AAGGAU   1   *|||||||||||||-|||||| targets:1117   AUCGUUUGACUUUUAUUCCUA   1137 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-145-A04, full insert sequence	NA	coding protein	psRNATarget
XM_015767059.1	ncRNA:20   CAGCAAACUGAAAA-AAGGAU   1   *|||||||||||||-|||||| targets:1188   AUCGUUUGACUUUUAUUCCUA   1208 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group spidroin-1 (LOC4324145), mRNA	spidroin-1(LOC4324145)	coding protein	psRNATarget