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BaseInfo

ncRNA ID novel_osa_miR3447
Species Oryza sativa
Class miRNA
Genome position Chr6:23376331-23376395 [-]
Reference genome IRGSP-1.0
Source SRR2040389
Length 24
Mature sequence(if miRNA) 42 - AUGACGUUUCUAUCCCUCACAAGU - 65
Stem-loop(if miRNA) --                   CAA  A  A  A
  AUGACGUUUCUAUCCCUCA   GU CA GU G
  |||||||||||||||||||   || || || A
  UACUGCAAAGAUGGGGAGU   CG GU CG A
UA                   -AA  -  A  U
Stem-loop sequence AUGACGUUUCUAUCCCUCACAAGUACAAGUAGAAUGCAUGGCAAUGAGGGGUAGAAACGUCAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015759864.1
ncRNA:24   UGAACACUCCCUAUCUUUGCAGUA   1
  |||||||||||=||||||||||||
targets:1094   ACUUGUGAGGGGUAGAAACGUCAU   1117

1.5 PREDICTED: Oryza sativa Japonica Group mitotic-spindle organizing protein 1B (LOC4333190), mRNA mitotic-spindle organizing protein 1B(LOC4333190) coding protein psRNATarget
XM_015772668.1
ncRNA:24   UGAACACUCCCUAUCUUUGCAGUA   1
  |||||||||||=||||||||||||
targets:1094   ACUUGUGAGGGGUAGAAACGUCAU   1117

1.5 PREDICTED: Oryza sativa Japonica Group mitotic-spindle organizing protein 1B-like (LOC107277991), mRNA mitotic-spindle organizing protein 1B-like(LOC107277991) coding protein psRNATarget