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BaseInfo

ncRNA ID	novel_osa_miR3446
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:25366337-25366533 [+]
Reference genome	IRGSP-1.0
Source	SRR2040389
Length	24
Mature sequence(if miRNA)	1 - ACGUAGACUAAUGACAAAACCCAU - 24
Stem-loop(if miRNA)	--              C     CC   C    UCCCU   -        CA       UCUA         A                C     GA   U   ACGUAGACUAAUGA AAAAC  AUU CAUA     AGA CUAAUUCG  AGACAAA    UUGAGCCUA UUAAUCUAUGAUUGGC UAUGU  UGC A   |||||||||||||| |||||  ||| ||||     ||| ||||||||  |||||||    ||||||||| |||||||||||||||| |||||  |||   UGCAUCUGAUUAUU UUUUG  UAA GUAU     UCU GAUUAAGC  UCUGUUU    AAUUCGGAU AAUUAGGUAUUAAUCG GUACA  AUG C UU              A     AU   C    -UUAC   C        AC       UAAA         C                U     -A   A
Stem-loop sequence	ACGUAGACUAAUGACAAAACCCAUUCCAUAUCCCUAGACUAAUUCGCAAGACAAAUCUAUUGAGCCUAAUUAAUCUAUGAUUGGCCUAUGUGAUGCUACAGUAAACAUGUGCUAAUUAUGGAUUAACUAGGCUUAAAAAUUUUGUCUCACGAAUUAGCUCUCAUUUAUGCAAUUAGUUUUAUUAUUAGUCUACGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288236.1	ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1   |||*|||||||||||||||||||| targets:1883   AUGUGUUUUGUCAUUAGUCUACGU   1906 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1   ||**|||||||=|||||||||||| targets:2057   AUUUGUUUUGUUAUUAGUCUACGU   2080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
AK288617.1	ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1   ||**|||||||=|||||||||||* targets:2721   AUUCGUUUUGUUAUUAGUCUACGC   2744 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1   ||***||||||=|||||||||||| targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1   ||***||||||=|||||||||||| targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126 Target Full Sequence	1.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK067578.1	ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1   ||**|||||*|=|||||||||||| targets:1800   AUUUGUUUUAUUAUUAGUCUACGU   1823 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget