ncRNA ID | novel_osa_miR3446 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr5:25366337-25366533 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR2040389 |
Length | 24 |
Mature sequence(if miRNA) | 1 - ACGUAGACUAAUGACAAAACCCAU - 24 |
Stem-loop(if miRNA) |
--              C     CC   C    UCCCU   -        CA       UCUA         A                C     GA   U   ACGUAGACUAAUGA AAAAC  AUU CAUA     AGA CUAAUUCG  AGACAAA    UUGAGCCUA UUAAUCUAUGAUUGGC UAUGU  UGC A   |||||||||||||| |||||  ||| ||||     ||| ||||||||  |||||||    ||||||||| |||||||||||||||| |||||  |||   UGCAUCUGAUUAUU UUUUG  UAA GUAU     UCU GAUUAAGC  UCUGUUU    AAUUCGGAU AAUUAGGUAUUAAUCG GUACA  AUG C UU              A     AU   C    -UUAC   C        AC       UAAA         C                U     -A   A |
Stem-loop sequence | ACGUAGACUAAUGACAAAACCCAUUCCAUAUCCCUAGACUAAUUCGCAAGACAAAUCUAUUGAGCCUAAUUAAUCUAUGAUUGGCCUAUGUGAUGCUACAGUAAACAUGUGCUAAUUAUGGAUUAACUAGGCUUAAAAAUUUUGUCUCACGAAUUAGCUCUCAUUUAUGCAAUUAGUUUUAUUAUUAGUCUACGUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288236.1 |
|
0.0 | Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK119753.1 |
|
1.5 | Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK288617.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence | NA | coding protein | psRNATarget | |||||||||
XM_015764825.1 |
|
1.5 | PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA | pre-mRNA-splicing factor CWC22 homolog(LOC4351904) | coding protein | psRNATarget | |||||||||
AM778048.1 |
|
1.5 | Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena | NA | coding protein | psRNATarget | |||||||||
AK067578.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence | NA | coding protein | psRNATarget |