Search result

BaseInfo

ncRNA ID novel_osa_miR3446
Species Oryza sativa
Class miRNA
Genome position Chr5:25366337-25366533 [+]
Reference genome IRGSP-1.0
Source SRR2040389
Length 24
Mature sequence(if miRNA) 1 - ACGUAGACUAAUGACAAAACCCAU - 24
Stem-loop(if miRNA) --              C     CC   C    UCCCU   -        CA       UCUA         A                C     GA   U
  ACGUAGACUAAUGA AAAAC  AUU CAUA     AGA CUAAUUCG  AGACAAA    UUGAGCCUA UUAAUCUAUGAUUGGC UAUGU  UGC A
  |||||||||||||| |||||  ||| ||||     ||| ||||||||  |||||||    ||||||||| |||||||||||||||| |||||  |||
  UGCAUCUGAUUAUU UUUUG  UAA GUAU     UCU GAUUAAGC  UCUGUUU    AAUUCGGAU AAUUAGGUAUUAAUCG GUACA  AUG C
UU              A     AU   C    -UUAC   C        AC       UAAA         C                U     -A   A
Stem-loop sequence ACGUAGACUAAUGACAAAACCCAUUCCAUAUCCCUAGACUAAUUCGCAAGACAAAUCUAUUGAGCCUAAUUAAUCUAUGAUUGGCCUAUGUGAUGCUACAGUAAACAUGUGCUAAUUAUGGAUUAACUAGGCUUAAAAAUUUUGUCUCACGAAUUAGCUCUCAUUUAUGCAAUUAGUUUUAUUAUUAGUCUACGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288236.1
ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1
  |||*||||||||||||||||||||
targets:1883   AUGUGUUUUGUCAUUAGUCUACGU   1906

0.0 Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence NA coding protein psRNATarget
AK119753.1
ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1
  ||**|||||||=||||||||||||
targets:2057   AUUUGUUUUGUUAUUAGUCUACGU   2080

1.5 Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence NA coding protein psRNATarget
AK288617.1
ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1
  ||**|||||||=|||||||||||*
targets:2721   AUUCGUUUUGUUAUUAGUCUACGC   2744

2.5 Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence NA coding protein psRNATarget
XM_015764825.1
ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1
  ||***||||||=||||||||||||
targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126

1.5 PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA pre-mRNA-splicing factor CWC22 homolog(LOC4351904) coding protein psRNATarget
AM778048.1
ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1
  ||***||||||=||||||||||||
targets:103   AUUUAUUUUGUUAUUAGUCUACGU   126

1.5 Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena NA coding protein psRNATarget
AK067578.1
ncRNA:24   UACCCAAAACAGUAAUCAGAUGCA   1
  ||**|||||*|=||||||||||||
targets:1800   AUUUGUUUUAUUAUUAGUCUACGU   1823

2.5 Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence NA coding protein psRNATarget