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BaseInfo

ncRNA ID	novel_osa_miR3442
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:23465609-23465746 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR1555751;SRR4407775;SRR4407779;SRR1556016;SRR1556018;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - GAUUGUGACUAAUUUACGAGACGA - 24
Stem-loop(if miRNA)	---GA    G C   U             CUUUUAAG        U   AUG   UAAUAAU   GUGCU      UUGU A UAA UUACGAGACGAAU        CCUAAUUG UCC   AUU       AUG     A      |||| | ||| |||||||||||||        |||||||| |||   |||       |||     C      GGCA U AUU GGUGCUCUGCUUA        GGAUUAAU AGG   UAA       UAC     A UCUUA    G C   U             AAUAACUA        U   CAA   --UCGUU   AAAUU
Stem-loop sequence	GAUUGUGACUAAUUUACGAGACGAAUCUUUUAAGCCUAAUUGUUCCAUGAUUUAAUAAUAUGGUGCUACAUUAAACAUUUGCUAAUAACGGAUUAAUUAGGAUCAAUAAAUUCGUCUCGUGGUUUACUGACGGAUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288647.1	ncRNA:24   AGCAGAGCAUUUAAUCAGUGUUAG   1   |||||||||||||||||||=|||* targets:2108   UCGUCUCGUAAAUUAGUCAUAAUA   2131 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   AGCAGAGCAUUUAAUCAGUGUUAG   1   ||||||||*|||||||||=||||| targets:562   UCGUCUCGCAAAUUAGUCGCAAUC   585 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288772.1	ncRNA:24   AGCAGAGCAUUUAAUCAGUGUUAG   1   |=||||||*|||||||||=||||| targets:199   UUGUCUCGCAAAUUAGUCGCAAUC   222 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090068C09, full insert sequence	NA	coding protein	psRNATarget
AK289150.1	ncRNA:24   AGCAGAGCAUUUAAUCAGUGUUAG   1   ||*|||||*||||||||||||||| targets:717   UCAUCUCGCAAAUUAGUCACAAUC   740 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090099O03, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:24   AGCAGAGCAUUUAAUCAGUGUUAG   1   ||*|||||*|||||||||=||||| targets:131   UCAUCUCGCAAAUUAGUCGCAAUC   154 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
AK067582.1	ncRNA:24   AGCAGAGCAUUUAAUCAGUGUUAG   1   *=*||*||||||||||||*||||| targets:1233   AUUUCACGUAAAUUAGUCCCAAUC   1256 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013112G19, full insert sequence	NA	coding protein	psRNATarget