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BaseInfo

ncRNA ID	ath-miR5661
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr4:10449329-10449409 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	3 - AGAGGUACAUCAUGUAGUCUG - 23
Stem-loop(if miRNA)	UA       C  C       CU      -GUUUU  UGUA   AGAGGUA AU AUGUAGU  GAAAUG      GC    C   ||||||| || |||||||  ||||||      ||   UCUUCAU UG UACGUCG  CUUUAC      CG    U UG       C  U       UU      AGUCUU  UUUC
Stem-loop sequence	UAAGAGGUACAUCAUGUAGUCUGAAAUGGUUUUGCUGUACUCUUUGCUUCUGACAUUUCUUGCUGCAUUGUCUACUUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_118026.3	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   ||||||||||||||||||||| targets:446   CAGACUACAUGAUGUACCUCU   466 Target Full Sequence	0.0	Arabidopsis thaliana hypothetical protein (DUF594) partial mRNA	hypothetical protein (DUF594)(AT4G19080)	coding protein	psRNATarget
AY735698.1	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   |=||||||||||||||||||* targets:2035   CGGACUACAUGAUGUACCUCC   2055 Target Full Sequence	1.0	Arabidopsis thaliana hypothetical protein AT5G45540 mRNA, complete cds	NA	coding protein	psRNATarget
NM_123922.3	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   |=||||||||||||||||||* targets:2128   CGGACUACAUGAUGUACCUCC   2148 Target Full Sequence	1.0	Arabidopsis thaliana transmembrane protein, putative (DUF594) mRNA	transmembrane protein, putative (DUF594)(AT5G45540)	coding protein	psRNATarget
NM_118027.2	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   |=||||||||||||||=|||| targets:1814   CGGACUACAUGAUGUAUCUCU   1834 Target Full Sequence	1.5	Arabidopsis thaliana transmembrane protein, putative (DUF594) partial mRNA	transmembrane protein, putative (DUF594)(AT4G19090)	coding protein	psRNATarget
AK117297.1	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   ||||||||||||||||=|||* targets:1293   CAGACUACAUGAUGUAUCUCC   1313 Target Full Sequence	2.5	Arabidopsis thaliana At5g45460 mRNA for unknown protein, complete cds, clone: RAFL16-85-M17	NA	coding protein	psRNATarget
AK226965.1	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   ||||||||||||||||=|||* targets:2231   CAGACUACAUGAUGUAUCUCC   2251 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-35-H19	NA	coding protein	psRNATarget
NM_123914.5	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   ||||||||||||||||=|||* targets:2280   CAGACUACAUGAUGUAUCUCC   2300 Target Full Sequence	2.5	Arabidopsis thaliana transmembrane protein mRNA	transmembrane protein(AT5G45460)	coding protein	psRNATarget
NM_123916.2	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   ||||||||||||||||=|||* targets:2278   CAGACUACAUGAUGUAUCUCC   2298 Target Full Sequence	2.5	Arabidopsis thaliana transmembrane protein, putative (DUF594) mRNA	transmembrane protein, putative (DUF594)(AT5G45480)	coding protein	psRNATarget
NM_123915.2	ncRNA:21   GUCUGAUGUACUACAUGGAGA   1   ||||||||||||||||=|||* targets:2389   CAGACUACAUGAUGUAUCUCC   2409 Target Full Sequence	2.5	Arabidopsis thaliana transmembrane protein, putative (DUF594) mRNA	transmembrane protein, putative (DUF594)(AT5G45470)	coding protein	psRNATarget

Reference

1	PMID:21940835 "High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis"; Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN; Genome Res. 22:163-176(2012).