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BaseInfo

ncRNA ID novel_osa_miR3432
Species Oryza sativa
Class miRNA
Genome position Chr3:22218591-22218693 [-]
Reference genome IRGSP-1.0
Source SRR2040389
Length 21
Mature sequence(if miRNA) 83 - AUGCAAGUCAUUUUAGUAUUU - 103
Stem-loop(if miRNA) --   C    C                 C               AUAA    A
  AUG AAGU AUUUUAGUAUUUUCUAU UUUAUAUUGAUGUUA    AUCU G
  ||| |||| ||||||||||||||||| |||||||||||||||    ||||
  UAC UUCA UAAGAUCAUAAAAGGUG AAAUAUAACUACAAU    UAGA A
GU   A    A                 U               ---A    C
Stem-loop sequence AUGCAAGUCAUUUUAGUAUUUUCUAUCUUUAUAUUGAUGUUAAUAAAUCUAGACAGAUAUAACAUCAAUAUAAAUGUGGAAAAUACUAGAAUAACUUACAUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK060498.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=|||=||||||||||||
targets:1312   AAAUGCUAGAAUGACUUGCAU   1332

2.5 Oryza sativa Japonica Group cDNA clone:001-017-D02, full insert sequence NA coding protein psRNATarget
AK102210.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=|||=||||||||||||
targets:1677   AAAUGCUAGAAUGACUUGCAU   1697

2.5 Oryza sativa Japonica Group cDNA clone:J033087I04, full insert sequence NA coding protein psRNATarget
XM_015767363.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=|||=||||||||||||
targets:1773   AAAUGCUAGAAUGACUUGCAU   1793

2.5 PREDICTED: Oryza sativa Japonica Group CAAX prenyl protease 1 homolog (LOC4330318), mRNA CAAX prenyl protease 1 homolog(LOC4330318) coding protein psRNATarget
AK242637.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  |||||||||||||||||*|||
targets:689   AAAUACUAAAAUGACUUACAU   709

1.5 Oryza sativa Japonica Group cDNA, clone: J090023H18, full insert sequence NA coding protein psRNATarget
AK288854.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  |||||||||||||||||*|||
targets:288   AAAUACUAAAAUGACUUACAU   308

1.5 Oryza sativa Japonica Group cDNA, clone: J090075O17, full insert sequence NA coding protein psRNATarget
CT835025.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:286   AAAUGCUAAAAUGACUUACAU   306

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI029L19, full insert sequence NA coding protein psRNATarget
CT837577.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:296   AAAUGCUAAAAUGACUUACAU   316

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009E14, full insert sequence NA coding protein psRNATarget
XM_015783507.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:857   AAAUGCUAAAAUGACUUACAU   877

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF014-like (LOC107277887), mRNA ethylene-responsive transcription factor ERF014-like(LOC107277887) coding protein psRNATarget
CT837528.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:920   AAAUGCUAAAAUGACUUACAU   940

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
CT834553.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:945   AAAUGCUAAAAUGACUUACAU   965

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018G24, full insert sequence NA coding protein psRNATarget
CT837490.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:929   AAAUGCUAAAAUGACUUACAU   949

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence NA coding protein psRNATarget
AK069119.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:1041   AAAUGCUAAAAUGACUUACAU   1061

2.5 Oryza sativa Japonica Group cDNA clone:J023003A19, full insert sequence NA coding protein psRNATarget
CT832752.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:1009   AAAUGCUAAAAUGACUUACAU   1029

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011H19, full insert sequence NA coding protein psRNATarget
XM_015774602.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:1072   AAAUGCUAAAAUGACUUACAU   1092

2.5 PREDICTED: Oryza sativa Japonica Group protein app1 (LOC4334321), mRNA protein app1(LOC4334321) coding protein psRNATarget
AK287994.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:1557   AAAUGCUAAAAUGACUUACAU   1577

2.5 Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence NA coding protein psRNATarget
XM_015782137.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:1606   AAAUGCUAAAAUGACUUACAU   1626

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA uncharacterized LOC4339294(LOC4339294) coding protein psRNATarget
AK060965.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  |||||=|||||||||||*|||
targets:1625   AAAUAUUAAAAUGACUUACAU   1645

2.5 Oryza sativa Japonica Group cDNA clone:006-202-B11, full insert sequence NA coding protein psRNATarget
XM_015764593.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  |||||=|||||||||||*|||
targets:1625   AAAUAUUAAAAUGACUUACAU   1645

2.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 91C1 (LOC4352520), mRNA UDP-glycosyltransferase 91C1(LOC4352520) coding protein psRNATarget
AK121202.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  |||||=|||||||||||*|||
targets:1625   AAAUAUUAAAAUGACUUACAU   1645

2.5 Oryza sativa Japonica Group cDNA clone:J023087K24, full insert sequence NA coding protein psRNATarget
AK102955.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:861   AAAUGCUAAAAUGACUUACAU   881

2.5 Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence NA coding protein psRNATarget
XM_015759908.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:986   AAAUGCUAAAAUGACUUACAU   1006

2.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPM1 (LOC4350124), mRNA disease resistance protein RPM1(LOC4350124) coding protein psRNATarget
XM_015780917.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:4772   AAAUGCUAAAAUGACUUACAU   4792

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780918.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:4821   AAAUGCUAAAAUGACUUACAU   4841

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780916.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:4830   AAAUGCUAAAAUGACUUACAU   4850

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
AK288988.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:992   AAAUGCUAAAAUGACUUACAU   1012

2.5 Oryza sativa Japonica Group cDNA, clone: J090086L17, full insert sequence NA coding protein psRNATarget
AK121342.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:4682   AAAUGCUAAAAUGACUUACAU   4702

2.5 Oryza sativa Japonica Group cDNA clone:J023121A11, full insert sequence NA coding protein psRNATarget
XM_015789040.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  ||||=||||||||||||*|||
targets:4848   AAAUGCUAAAAUGACUUACAU   4868

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266525 (LOC9266525), transcript variant X1, mRNA uncharacterized LOC9266525(LOC9266525) coding protein psRNATarget
AK108630.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  *||||||||||*|||||||||
targets:1685   CAAUACUAAAAAGACUUGCAU   1705

1.5 Oryza sativa Japonica Group cDNA clone:002-147-F01, full insert sequence NA coding protein psRNATarget
XM_015763482.1
ncRNA:21   UUUAUGAUUUUACUGAACGUA   1
  *||||||||||*|||||||||
targets:1719   CAAUACUAAAAAGACUUGCAU   1739

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4352431 (LOC4352431), mRNA uncharacterized LOC4352431(LOC4352431) coding protein psRNATarget
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