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BaseInfo

ncRNA ID novel_osa_miR3431
Species Oryza sativa
Class miRNA
Genome position Chr11:22663543-22663591 [+]
Reference genome IRGSP-1.0
Source SRR1555747;SRR2099567;SRR4407954;SRR4407961;SRR1556020
Length 24
Mature sequence(if miRNA) 26 - CAUUGUAUGUGGAUUUUGGAGGAA - 49
Stem-loop(if miRNA) --   A        C    G    
  CCU UGAAAUUC UAUA AAUGG
  ||| |||||||| |||| ||||C
  GGA GUUUUAGG GUAU UUACA
AA   G        U    G    
Stem-loop sequence CCUAUGAAAUUCCUAUAGAAUGGCACAUUGUAUGUGGAUUUUGGAGGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK064479.1
ncRNA:24   AAGGAGGUUUUAGGUGUAUGUUAC   1
  ||||||||||||||||||=|||||
targets:1485   UUCCUCCAAAAUCCACAUGCAAUG   1508

1.5 Oryza sativa Japonica Group cDNA clone:002-111-A08, full insert sequence NA coding protein psRNATarget
AK288287.1
ncRNA:24   AAGGAGGUUUUAGGUGUAUGUUAC   1
  |||||||||||||=||||||||||
targets:1700   UUCCUCCAAAAUCUACAUACAAUG   1723

1.5 Oryza sativa Japonica Group cDNA, clone: J090018F21, full insert sequence NA coding protein psRNATarget