A ncRNA database for oil producing plants

Search result

ncRNA ID	novel_osa_miR3419
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:42173961-42174135 [+]
Reference genome	IRGSP-1.0
Source	SRR2040389;SRR2040391;SRR5049787
Length	24
Mature sequence(if miRNA)	1 - GACUUUUUGAUAAACGUUUGACCU - 24
Stem-loop(if miRNA)	-- C A U AAAA U -CAUU UAU --G UUUAU GA UUUUUGAU AACGUUUGACC UUCGUCUUAUUUAA UUUAUGUAA UAU UAUUU UGU ACUUAA CAUC \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|A CU AAAAAUUG UUGCAAACUGG AAGCAGAAUAAGUU AAAUAUAUU AUA AUGAA ACA UGAAUU GUAA AA A G U AAAA U UUUUU --U GUA -UCUU
Stem-loop sequence	GACUUUUUGAUAAACGUUUGACCUUUCGUCUUAUUUAAAAAAUUUAUGUAAUUAUCAUUUAUUUUAUUGUGACUUAAUUUAUCAUCAAAUGUUCUUUAAGUAUGACAUAAGUAUUUUUAUAUUUAUAUAAAAAAAUUGAAUAAGACGAAUGGUCAAACGUUGGUUAAAAAAUCAA

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

CT835080.1

1.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN071I07, full insert sequence

coding protein

AK068361.1

0.0

Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence

coding protein

AK288703.1

2.5

Oryza sativa Japonica Group cDNA, clone: J090061G13, full insert sequence

coding protein

AK241447.1

ncRNA:24	UC-CAGUUUGCAAAUAGUUUUUCAG	1
	\|\|-\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|=
targets:1954	AGAGCCAAACAUUUAUCAAAAAGUU	1978

2.0

Oryza sativa Japonica Group cDNA, clone: J065163F05, full insert sequence

coding protein