A ncRNA database for oil producing plants

Search result

BaseInfo

ncRNA ID	novel_osa_miR3417
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:21355426-21355547 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR2097779;SRR2098823;SRR2099428;SRR1556020
Length	24
Mature sequence(if miRNA)	99 - ACAUUUUUAAAAAGGUCAACGGCG - 122
Stem-loop(if miRNA)	-- A C A UC CUU AAAUU CUGUU AUUUUUUUAAA AU UUUGACCGUUUGUUUUAUU AAAA UUAUA U \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| G GGCAA UGGAAAAAUUU UA AAAUUGGCAAGCAGAAUAA UUUU AAUAU U GC C U C UU -UU CAAAA
Stem-loop sequence	CUGUUAAUUUUUUUAAACAUAUUUGACCGUUUGUUUUAUUUCAAAACUUUUAUAAAAUUUGUAAAACUAUAAUUUUUUUUAAUAAGACGAACGGUUAAACAUUUUUAAAAAGGUCAACGGCG

Targets Info

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

AK240887.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:507	CGCCGUUGACUUUUUUAAAAAUGU	530

1.0

Oryza sativa Japonica Group cDNA, clone: J065029G04, full insert sequence

coding protein

psRNATarget

XM_015764161.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:516	CGCCGUUGACUUUUUUAAAAAUGU	539

1.0

PREDICTED: Oryza sativa Japonica Group macrophage migration inhibitory factor homolog (LOC4351273), transcript variant X2, mRNA

macrophage migration inhibitory factor homolog(LOC4351273)

coding protein

psRNATarget

AK288960.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	=\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:225	UGCCGUUGACUUUUUUAAAAAUGU	248

1.0

Oryza sativa Japonica Group cDNA, clone: J090084F05, full insert sequence

coding protein

psRNATarget

AK110581.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|*\|
targets:478	CGCCGUUGACUUUUUUAAAAAUAU	501

2.5

Oryza sativa Japonica Group cDNA clone:002-168-E09, full insert sequence

coding protein

psRNATarget

XM_015792994.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|*\|\|\|\|\|\|\|\|
targets:1848	CGCCGUUGACUUUUUAAAAAAUGU	1871

2.5

PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC4345414), mRNA

putative serine/threonine-protein kinase-like protein CCR3(LOC4345414)

coding protein

psRNATarget

AK240959.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:2501	CGCCGUUGACUUUUUUAAAUAUGU	2524

2.5

Oryza sativa Japonica Group cDNA, clone: J065045G08, full insert sequence

coding protein

psRNATarget

AK242125.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|*\|\|\|\|\|\|\|\|
targets:1845	CGCCGUUGACUUUUUAAAAAAUGU	1868

2.5

Oryza sativa Japonica Group cDNA, clone: J075148C03, full insert sequence

coding protein

psRNATarget

XM_015773188.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:680	CGCCGUUGACUUUUUUAAACAUGU	703

2.5

PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (LOC4334654), transcript variant X1, mRNA

G-type lectin S-receptor-like serine/threonine-protein kinase RLK1(LOC4334654)

coding protein

psRNATarget

XM_015773190.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:695	CGCCGUUGACUUUUUUAAACAUGU	718

2.5

PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (LOC4334654), transcript variant X3, mRNA

G-type lectin S-receptor-like serine/threonine-protein kinase RLK1(LOC4334654)

coding protein

psRNATarget

XM_015773189.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:827	CGCCGUUGACUUUUUUAAACAUGU	850

2.5

PREDICTED: Oryza sativa Japonica Group G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 (LOC4334654), transcript variant X2, mRNA

G-type lectin S-receptor-like serine/threonine-protein kinase RLK1(LOC4334654)

coding protein

psRNATarget

AK287756.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:2561	CGCCGUUGACUUUUUUAAACAUGU	2584

2.5

Oryza sativa Japonica Group cDNA, clone: J065161D16, full insert sequence

coding protein

psRNATarget

XM_015793267.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3327	CGUCGUUGACUUUUUUAAACAUGU	3350

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X3, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

AK243524.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:2962	CGUCGUUGACUUUUUUAAAUAUGU	2985

2.5

Oryza sativa Japonica Group cDNA, clone: J100075M04, full insert sequence

coding protein

psRNATarget

XM_015793268.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3429	CGUCGUUGACUUUUUUAAACAUGU	3452

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X4, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

XM_015793271.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3434	CGUCGUUGACUUUUUUAAACAUGU	3457

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X7, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

XM_015793269.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3461	CGUCGUUGACUUUUUUAAACAUGU	3484

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X5, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

XM_015793272.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3462	CGUCGUUGACUUUUUUAAACAUGU	3485

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X8, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

XM_015793270.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3466	CGUCGUUGACUUUUUUAAACAUGU	3489

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X6, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

XM_015793264.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3479	CGUCGUUGACUUUUUUAAACAUGU	3502

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X1, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

XM_015793265.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|=\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3484	CGUCGUUGACUUUUUUAAACAUGU	3507

2.5

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At3g47530 (LOC4345655), transcript variant X2, mRNA

pentatricopeptide repeat-containing protein At3g47530(LOC4345655)

coding protein

psRNATarget

XM_015762609.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|=\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:3541	CGCUGUUGACUUUUUUAAACAUGU	3564

2.5

PREDICTED: Oryza sativa Japonica Group putative disease resistance protein At1g50180 (LOC4351961), transcript variant X4, mRNA

putative disease resistance protein At1g50180(LOC4351961)

coding protein

psRNATarget

CT833961.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:742	CGCAGUUGACUUUUUUAAAUAUGU	765

2.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA003N03, full insert sequence

coding protein

psRNATarget

CT833962.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:769	CGCAGUUGACUUUUUUAAAUAUGU	792

2.5

Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110D05, full insert sequence

coding protein

psRNATarget

XM_015791218.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:1775	CACCGUUGACUUUUUUAAAUAUGU	1798

2.5

PREDICTED: Oryza sativa Japonica Group protein DETOXIFICATION 18 (LOC4342209), mRNA

protein DETOXIFICATION 18(LOC4342209)

coding protein

psRNATarget

AK288811.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:1741	CGCCAUUGACUUUUUUAAAUAUGU	1764

2.5

Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence

coding protein

psRNATarget

AK066136.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:3353	CACCGUUGACUUUUUUAAACAUGU	3376

2.5

Oryza sativa Japonica Group cDNA clone:J013053B22, full insert sequence

coding protein

psRNATarget

AK073219.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:3366	CACCGUUGACUUUUUUAAACAUGU	3389

2.5

Oryza sativa Japonica Group cDNA clone:J033009K14, full insert sequence

coding protein

psRNATarget

AK288428.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:744	CGCAGUUGACUUUUUUAAACAUGU	767

2.5

Oryza sativa Japonica Group cDNA, clone: J090032O10, full insert sequence

coding protein

psRNATarget

AK288408.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:2830	CGCCAUUGACUUUUUUAAACAUGU	2853

2.5

Oryza sativa Japonica Group cDNA, clone: J090030J08, full insert sequence

coding protein

psRNATarget

AK288963.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|\|\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:101	CGCCAUUGACUUUUUUAAAUAUGU	124

2.5

Oryza sativa Japonica Group cDNA, clone: J090084H09, full insert sequence

coding protein

psRNATarget

AK288575.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	=\|=\|\|\|\|\|\|=\|\|\|\|\|\|\|\|\|\|\|\|
targets:3546	UACUGUUGACUUUUUUAAAAAUAU	3569

2.5

Oryza sativa Japonica Group cDNA, clone: J090049A09, full insert sequence

coding protein

psRNATarget

AK120400.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	=\|\|--\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:9	UGC--UUGAUUUUUUUAAAAAUGU	30

2.0

Oryza sativa Japonica Group cDNA clone:J013088D23, full insert sequence

coding protein

psRNATarget

AK066971.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	=\|\|--\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2426	UGC--UUGAUUUUUUUAAAAAUGU	2447

2.0

Oryza sativa Japonica Group cDNA clone:J013089C22, full insert sequence

coding protein

psRNATarget

XM_015775466.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	=\|\|--\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2441	UGC--UUGAUUUUUUUAAAAAUGU	2462

2.0

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g13600 (LOC9268583), transcript variant X3, mRNA

pentatricopeptide repeat-containing protein At2g13600(LOC9268583)

coding protein

psRNATarget

XM_015775464.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	=\|\|--\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2441	UGC--UUGAUUUUUUUAAAAAUGU	2462

2.0

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g13600 (LOC9268583), transcript variant X1, mRNA

pentatricopeptide repeat-containing protein At2g13600(LOC9268583)

coding protein

psRNATarget

XM_015775465.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	=\|\|--\|\|\|\|==\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2441	UGC--UUGAUUUUUUUAAAAAUGU	2462

2.0

PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At2g13600 (LOC9268583), transcript variant X2, mRNA

pentatricopeptide repeat-containing protein At2g13600(LOC9268583)

coding protein

psRNATarget

AK065369.1

ncRNA:24	GCGGCAACUGGAAAAAUUUUUACA	1
	\|\|--\|\|\|\|\|\|=\|\|\|\|\|\|\|\|*\|\|\|\|
targets:1418	CG--GUUGACUUUUUUAAACAUGU	1439

2.5

Oryza sativa Japonica Group cDNA clone:J013023A04, full insert sequence

coding protein

psRNATarget