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BaseInfo

ncRNA ID novel_osa_miR3416
Species Oryza sativa
Class miRNA
Genome position Chr1:24498277-24498348 [+]
Reference genome IRGSP-1.0
Source SRR2040389
Length 22
Mature sequence(if miRNA) 51 - UAAUGAUGGACUAAUUAGGUUC - 72
Stem-loop(if miRNA) --               G      C   A   AUAC
  ACCUAAUUAGUCUAU AUUAGC AUA GUG    A
  ||||||||||||||| |||||| ||| |||    G
  UGGAUUAAUCAGGUA UAAUCG UGU CAC    U
CU               G      -   A   CCAA
Stem-loop sequence ACCUAAUUAGUCUAUGAUUAGCCAUAAGUGAUACAGUAACCCACAUGUGCUAAUGAUGGACUAAUUAGGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015757506.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  ||=||||||||*||||||||||
targets:2067   GAGCCUAAUUAAUCCAUCAUUA   2088

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9268466 (LOC9268466), transcript variant X1, mRNA uncharacterized LOC9268466(LOC9268466) coding protein psRNATarget
AK241322.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  ||=||||||||*||||||||||
targets:2074   GAGCCUAAUUAAUCCAUCAUUA   2095

1.5 Oryza sativa Japonica Group cDNA, clone: J065142K05, full insert sequence NA coding protein psRNATarget
AK071825.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  ||=||||||||||||||*||||
targets:1330   GAGCCUAAUUAGUCCAUGAUUA   1351

1.5 Oryza sativa Japonica Group cDNA clone:J023115H13, full insert sequence NA coding protein psRNATarget
AK064090.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  ||=||||||||||||||*||||
targets:1272   GAGCCUAAUUAGUCCAUGAUUA   1293

1.5 Oryza sativa Japonica Group cDNA clone:002-100-D06, full insert sequence NA coding protein psRNATarget
AK288279.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:5631   AAGCCUAAUUAAUCCAUCAUUA   5652

1.5 Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence NA coding protein psRNATarget
XM_015769709.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:3005   AAGCCUAAUUAAUCCAUCAUUA   3026

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015769710.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:2871   AAGCCUAAUUAAUCCAUCAUUA   2892

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
AK288948.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:462   AAGCCUAAUUAAUCCAUCAUUA   483

1.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK068143.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:1164   AAGCCUAAUUAAUCCAUCAUUA   1185

1.5 Oryza sativa Japonica Group cDNA clone:J013134C06, full insert sequence NA coding protein psRNATarget
AK068835.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:2693   AAGCCUAAUUAUUCCAUCAUUA   2714

1.5 Oryza sativa Japonica Group cDNA clone:J013158G20, full insert sequence NA coding protein psRNATarget
XM_015775081.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:1053   AAGCCUAAUUAAUCCAUCAUUA   1074

1.5 PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA methylesterase 3(LOC4324570) coding protein psRNATarget
CT831729.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||||||||*||||
targets:387   AAGCCUAAUUAGUCCAUGAUUA   408

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117A02, full insert sequence NA coding protein psRNATarget
AK287842.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=||||||||*||||||||||
targets:1032   AAGCCUAAUUAAUCCAUCAUUA   1053

1.5 Oryza sativa Japonica Group cDNA, clone: J065194J09, full insert sequence NA coding protein psRNATarget
XM_015775655.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  ||||||||*||||||||*||||
targets:1870   GAACCUAACUAGUCCAUGAUUA   1891

2.5 PREDICTED: Oryza sativa Japonica Group 4-hydroxyphenylacetaldehyde oxime monooxygenase (LOC4334792), mRNA 4-hydroxyphenylacetaldehyde oxime monooxygenase(LOC4334792) coding protein psRNATarget
XM_015779465.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=*|||||||||=||||||||
targets:4325   AAGACUAAUUAGUUCAUCAUUA   4346

2.5 PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase FLS2 (LOC4337016), mRNA LRR receptor-like serine/threonine-protein kinase FLS2(LOC4337016) coding protein psRNATarget
AK120799.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=*|||||||||=||||||||
targets:3900   AAGACUAAUUAGUUCAUCAUUA   3921

2.5 Oryza sativa Japonica Group cDNA clone:J023012H18, full insert sequence NA coding protein psRNATarget
AK288328.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|==|||||||*||||||||||
targets:261   AAGUCUAAUUAUUCCAUCAUUA   282

2.5 Oryza sativa Japonica Group cDNA, clone: J090022I04, full insert sequence NA coding protein psRNATarget
AK288192.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  ||=|*||||||||||||*||||
targets:2196   GAGCAUAAUUAGUCCAUGAUUA   2217

2.5 Oryza sativa Japonica Group cDNA, clone: J090007C12, full insert sequence NA coding protein psRNATarget
AK072891.1
ncRNA:22   CUUGGAUUAAUCAGGUAGUAAU   1
  *|=*|||||||||||||*||||
targets:887   AAGACUAAUUAGUCCAUGAUUA   908

2.5 Oryza sativa Japonica Group cDNA clone:J023147C03, full insert sequence NA coding protein psRNATarget
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