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BaseInfo

ncRNA ID	novel_osa_miR3412
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:21182648-21182806 [-]
Reference genome	IRGSP-1.0
Source	SRR2040389;SRR2040393
Length	22
Mature sequence(if miRNA)	1 - UGAGAUUUGGUAUGAAUGUAUU - 22
Stem-loop(if miRNA)	--                A               A   C             AAA           GA          AAC   UACAUUCAUACCGAAU UCAAGUCCAAACUCA CUU AUUUGAGAGAAAA   GAGACAAAUUU  GGUGAAUAGU   A   |||||||||||||||| ||||||||||||||| ||| |||||||||||||   |||||||||||  ||||||||||   AUGUAAGUAUGGUUUA AGUUCGGGUUUGAGU GAA UAAACUUUCUUUU   UUUUGUUUAAA  CCACUUAUCA   G UU                G               A   A             ---           GC          CAA
Stem-loop sequence	UACAUUCAUACCGAAUAUCAAGUCCAAACUCAACUUCAUUUGAGAGAAAAAAAGAGACAAAUUUGAGGUGAAUAGUAACAGAACACUAUUCACCCGAAAUUUGUUUUUUUUCUUUCAAAUAAAGAUGAGUUUGGGCUUGAGAUUUGGUAUGAAUGUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403798.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||||||||| targets:20   AAUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 1923 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235928.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||||||||| targets:20   AAUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 1923 from Patent EP2985353	NA	coding protein	psRNATarget
JB164259.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||||||||| targets:20   AAUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 1923 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236177.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||||||||| targets:20   AAUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 2172 from Patent EP2985353	NA	coding protein	psRNATarget
JB164508.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||||||||| targets:20   AAUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 2172 from Patent EP2559767	NA	coding protein	psRNATarget
HI404047.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||||||||| targets:20   AAUACAUUCAUACCAAAUCUCA   41 Target Full Sequence	0.0	Sequence 2172 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236280.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||=||||||||| targets:20   AAUACAUUCAUAUCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2275 from Patent EP2985353	NA	coding protein	psRNATarget
HI404150.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||=||||||||| targets:20   AAUACAUUCAUAUCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2275 from Patent EP2074227	NA	coding protein	psRNATarget
JB164611.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||=||||||||| targets:20   AAUACAUUCAUAUCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2275 from Patent EP2559767	NA	coding protein	psRNATarget
HI403625.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||=|||||| targets:20   AAUACAUUCAUACCAGAUCUCA   41 Target Full Sequence	1.5	Sequence 1750 from Patent EP2074227	NA	coding protein	psRNATarget
JB164086.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||=|||||| targets:20   AAUACAUUCAUACCAGAUCUCA   41 Target Full Sequence	1.5	Sequence 1750 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235755.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||||||||||=|||||| targets:20   AAUACAUUCAUACCAGAUCUCA   41 Target Full Sequence	1.5	Sequence 1750 from Patent EP2985353	NA	coding protein	psRNATarget
CT835929.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||||||||||=| targets:558   AAUACAUUCAUACCAAAUCUUA   579 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA005B17, full insert sequence	NA	coding protein	psRNATarget
HI404485.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||*||||||||| targets:20   AAUACAUUCAUAGCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2610 from Patent EP2074227	NA	coding protein	psRNATarget
JB164946.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||*||||||||| targets:20   AAUACAUUCAUAGCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2610 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236615.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   ||||||||||||*||||||||| targets:20   AAUACAUUCAUAGCAAAUCUCA   41 Target Full Sequence	1.5	Sequence 2610 from Patent EP2985353	NA	coding protein	psRNATarget
CT832946.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||*||||||||||*||| targets:802   AAUACAUCCAUACCAAAUGUCA   823 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240N02, full insert sequence	NA	coding protein	psRNATarget
AK065400.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   |||||||*||||||||||*||| targets:858   AAUACAUCCAUACCAAAUGUCA   879 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013020I02, full insert sequence	NA	coding protein	psRNATarget
AK288500.1	ncRNA:22   UUAUGUAAGUAUGGUUUAGAGU   1   *||||||*|||||*|||||||| targets:1438   CAUACAUGCAUACAAAAUCUCA   1459 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090041C18, full insert sequence	NA	coding protein	psRNATarget