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BaseInfo

ncRNA ID	novel_osa_miR3410
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:732262-732458 [-]
Reference genome	IRGSP-1.0
Source	SRR2040389;SRR3123650;SRR1738239
Length	23
Mature sequence(if miRNA)	175 - ACGUAGACUAAUGACAAAACCUA - 197
Stem-loop(if miRNA)	--AC     C      C     CU   C     UCUU   -C     C    G      CUAU                         C   GUGAA  U     GUAGA UAAUGA AAAAC  AUU UAUAA    AGA  UAAUU GCGA AUAAAU    UGAGCCUAAUUAAUUCAUGAUUAGC UAU     GC A     ||||| |||||| |||||  ||| |||||    |||  ||||| |||| ||||||    ||||||||||||||||||||||||| |||     ||     UAUUU AUUAUU UUUUG  UAA GUAUU    UCU  AUUAA CGCU UGUUUA    AUUCGGAUUAAUUAGGUAUUAAUCG AUA     UG C UUUA     A      A     UU   U     -UAC   CA     A    A      AAAU                         U   -AAAA  C
Stem-loop sequence	ACGUAGACUAAUGACAAAACCUAUUCUAUAAUCUUAGACUAAUUCGCGAGAUAAAUCUAUUGAGCCUAAUUAAUUCAUGAUUAGCCUAUGUGAAGCUACCGUAAAAAUAUGCUAAUUAUGGAUUAAUUAGGCUUAUAAAAUUUGUAUCGCAAAUUAACUCUCAUUUAUGUAAUUUGUUUUAUUAUUAAUUUAUAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288236.1	ncRNA:23   AUCCAAAACAGUAAUCAGAUGCA   1   |=*|||||||||||||||||||| targets:1884   UGUGUUUUGUCAUUAGUCUACGU   1906 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
AK119753.1	ncRNA:23   AUCCAAAACAGUAAUCAGAUGCA   1   |**|||||||=|||||||||||| targets:2058   UUUGUUUUGUUAUUAGUCUACGU   2080 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
XM_015764825.1	ncRNA:23   AUCCAAAACAGUAAUCAGAUGCA   1   ||--||||||=|||||||||||| targets:106   UA--UUUUGUUAUUAGUCUACGU   126 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group pre-mRNA-splicing factor CWC22 homolog (LOC4351904), mRNA	pre-mRNA-splicing factor CWC22 homolog(LOC4351904)	coding protein	psRNATarget
AM778048.1	ncRNA:23   AUCCAAAACAGUAAUCAGAUGCA   1   ||--||||||=|||||||||||| targets:106   UA--UUUUGUUAUUAGUCUACGU   126 Target Full Sequence	1.5	Oryza sativa Japonica Group mRNA for putative pre-mRNA-splicing factor cwc-22 (Os12g15420 gene), cultivar Azucena	NA	coding protein	psRNATarget
AK288617.1	ncRNA:23   AUCCAAAACAGUAAUCAGAUGCA   1   |**|||||||=|||||||||||* targets:2722   UUCGUUUUGUUAUUAGUCUACGC   2744 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence	NA	coding protein	psRNATarget
AK067578.1	ncRNA:23   AUCCAAAACAGUAAUCAGAUGCA   1   |**|||||*|=|||||||||||| targets:1801   UUUGUUUUAUUAUUAGUCUACGU   1823 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013110M15, full insert sequence	NA	coding protein	psRNATarget