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BaseInfo

ncRNA ID	novel_osa_miR3409
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:5542730-5542919 [+]
Reference genome	IRGSP-1.0
Source	SRR2040389
Length	24
Mature sequence(if miRNA)	1 - GAAACUUGGAAACUACCGUUGGAU - 24
Stem-loop(if miRNA)	--                           A                                                  G   ----------     C   GAAACUUGGAAACUACCGUUGGAUCGA AAAUGGAUGUCCGAGAUUCGUCCACGUCACCACGAGUUAAAAUUUAACUC CAG          AUUCA U   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||          |||||   CUUUGAACUUUUGAUGGCAACUUAGCU UUUACCUGCAGGCUCUAAGCAGGUGCAGUGGUGCUCAAUUUUAAAUUGAG GUC          UGAGU C AC                           C                                                  G   AUUUAAAAAU     A
Stem-loop sequence	GAAACUUGGAAACUACCGUUGGAUCGAAAAAUGGAUGUCCGAGAUUCGUCCACGUCACCACGAGUUAAAAUUUAACUCGCAGAUUCACUCAUGAGUUAAAAAUUUACUGGGAGUUAAAUUUUAACUCGUGGUGACGUGGACGAAUCUCGGACGUCCAUUUCUCGAUUCAACGGUAGUUUUCAAGUUUCCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288582.1	ncRNA:24   UAGGUUGCCAUCAAAGGUUCAAAG   1   |||=|||||||||||||||||||| targets:217   AUCUAACGGUAGUUUCCAAGUUUC   240 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   UAGGUUGCCAUCAAAGGUUCAAAG   1   |||||||||*|||||||||||||* targets:5554   AUCCAACGGAAGUUUCCAAGUUUG   5577 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
XM_015776882.1	ncRNA:24   UAGGUUGCCAUCAAAGGUUCAAAG   1   *|*||||**||||||||||||||* targets:670   UUGCAACAAUAGUUUCCAAGUUUG   693 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group phosphopantothenoylcysteine decarboxylase subunit VHS3 (LOC9271947), transcript variant X2, mRNA	phosphopantothenoylcysteine decarboxylase subunit VHS3(LOC9271947)	coding protein	psRNATarget