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BaseInfo

ncRNA ID	novel_osa_miR3408
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:6279587-6279768 [-]
Reference genome	IRGSP-1.0
Source	SRR2040389
Length	22
Mature sequence(if miRNA)	1 - UUAAAACAGUUUGACUUUGACU - 22
Stem-loop(if miRNA)	--     A       AC     A   A            UAC   U           CA    ACCAAAUUAGUUUCAUUAAAUCAAUAAUU   UUAAA UUAAAUU  UUUAA UUU ACUAAGUUUAUA   AAA AUAAUAAUAUU  UAAU                             G   ||||| |||||||  ||||| ||| ||||||||||||   ||| |||||||||||  ||||   AGUUU AGUUUGA  AAAUU AAA UGAUUCAAAUAU   UUU UAUUAUUGUAA  AAUU                             A UC     C       CA     C   C            -CU   U           -A    GAGUUGUGUUUAAAUAAUACUUUUAUAUA
Stem-loop sequence	UUAAAAUUAAAUUACUUUAAAUUUAACUAAGUUUAUAUACAAAUAUAAUAAUAUUCAUAAUACCAAAUUAGUUUCAUUAAAUCAAUAAUUGAAUAUAUUUUCAUAAUAAAUUUGUGUUGAGUUAAAAAUGUUAUUAUUUUUUCUAUAAACUUAGUCAAACUUAAAACAGUUUGACUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755259.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||||||||||||||||||||| targets:809   GGUCAAAGUCAAACUGUUUUAA   830 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA	uncharacterized LOC4346670(LOC4346670)	coding protein	psRNATarget
AK120395.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||||||||||||=|||||||| targets:730   GGUCAAAGUCAAAUUGUUUUAA   751 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013075G01, full insert sequence	NA	coding protein	psRNATarget
AK288994.1	ncRNA:22   UCAGUUUCAGUUUGAC-AAAAUU   1   ||||||||||||||||-|||||| targets:1366   AGUCAAAGUCAAACUGCUUUUAA   1388 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090087P03, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||*|||||||||||||||||| targets:148   GGUGAAAGUCAAACUGUUUUAA   169 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK288635.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||||||*|||||||||||||| targets:405   GGUCAAAAUCAAACUGUUUUAA   426 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090055J05, full insert sequence	NA	coding protein	psRNATarget
AK068259.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =|||||||||||||||*||||| targets:1273   GGUCAAAGUCAAACUGCUUUAA   1294 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013149O16, full insert sequence	NA	coding protein	psRNATarget
AK288440.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||||||*|||||||||||||| targets:1210   GGUCAAAAUCAAACUGUUUUAA   1231 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090034G20, full insert sequence	NA	coding protein	psRNATarget
AK065615.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =*|||||||=|||||||||||| targets:2848   GAUCAAAGUUAAACUGUUUUAA   2869 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013026B17, full insert sequence	NA	coding protein	psRNATarget
XM_015790873.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||||||||||||||||||*|= targets:884   GGUCAAAGUCAAACUGUUUCAG   905 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343452 (LOC4343452), mRNA	uncharacterized LOC4343452(LOC4343452)	coding protein	psRNATarget
AK061217.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||=||||||||||||*||||| targets:1326   GGUUAAAGUCAAACUGCUUUAA   1347 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-210-E06, full insert sequence	NA	coding protein	psRNATarget
XM_015776978.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||=||||||||||||*||||| targets:1504   GGUUAAAGUCAAACUGCUUUAA   1525 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0481 protein At3g47200 (LOC4327921), mRNA	UPF0481 protein At3g47200(LOC4327921)	coding protein	psRNATarget
AK243090.1	ncRNA:22   UCA-GUUUCAGUUUGACAAAAUU   1   |||-|*||||||||||||||||| targets:960   AGUGCCAAGUCAAACUGUUUUAA   982 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J100022L23, full insert sequence	NA	coding protein	psRNATarget
AK067908.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   **|||||||||||*|||||||| targets:1682   UUUCAAAGUCAAAAUGUUUUAA   1703 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013126N07, full insert sequence	NA	coding protein	psRNATarget
XM_015795749.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   **|||||||||||*|||||||| targets:1829   UUUCAAAGUCAAAAUGUUUUAA   1850 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hexose carrier protein HEX6 (LOC4346567), mRNA	hexose carrier protein HEX6(LOC4346567)	coding protein	psRNATarget
AK288358.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =*|||||||||||||||||*|| targets:899   GCUCAAAGUCAAACUGUUUCAA   920 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =||||||*|||||||||||*|| targets:942   GGUCAAAUUCAAACUGUUUCAA   963 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK242901.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =|||||||*||||||||||*|| targets:1272   GGUCAAAGACAAACUGUUUCAA   1293 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence	NA	coding protein	psRNATarget
XM_015788305.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =|||||||*||||||||||*|| targets:1322   GGUCAAAGACAAACUGUUUCAA   1343 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA	F-box/FBD/LRR-repeat protein At1g13570(LOC4340210)	coding protein	psRNATarget
AK288873.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   =*|||||*|||||=|||||||| targets:7112   GAUCAAACUCAAAUUGUUUUAA   7133 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
XM_015760540.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   |**|||||*||||||||||||| targets:1046   ACACAAAGACAAACUGUUUUAA   1067 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group dirigent protein 19 (LOC4350075), mRNA	dirigent protein 19(LOC4350075)	coding protein	psRNATarget
AF356352.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   ||**||=||||||||||||||* targets:535   AGCGAAGGUCAAACUGUUUUAU   556 Target Full Sequence	3.0	Oryza sativa acid phosphatase mRNA, complete cds	NA	coding protein	psRNATarget
AB066560.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   ||**||=||||||||||||||* targets:559   AGCGAAGGUCAAACUGUUUUAU   580 Target Full Sequence	3.0	Oryza sativa ossap1 mRNA for putative secretory acid phosphatase precursor, complete cds	NA	coding protein	psRNATarget
AK061635.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   ||**||=||||||||||||||* targets:604   AGCGAAGGUCAAACUGUUUUAU   625 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-036-A09, full insert sequence	NA	coding protein	psRNATarget
XM_015788504.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   ||**||=||||||||||||||* targets:705   AGCGAAGGUCAAACUGUUUUAU   726 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group phosphoenolpyruvate phosphatase (LOC4341643), transcript variant X2, mRNA	phosphoenolpyruvate phosphatase(LOC4341643)	coding protein	psRNATarget
XM_015788503.1	ncRNA:22   UCAGUUUCAGUUUGACAAAAUU   1   ||**||=||||||||||||||* targets:953   AGCGAAGGUCAAACUGUUUUAU   974 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group phosphoenolpyruvate phosphatase (LOC4341643), transcript variant X1, mRNA	phosphoenolpyruvate phosphatase(LOC4341643)	coding protein	psRNATarget