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BaseInfo

ncRNA ID	novel_osa_miR3406
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:2970738-2970894 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	134 - AGACGAGUGAUCAAAAAUUGUAAG - 157
Stem-loop(if miRNA)	--     CG     C                        UGC    AUAAAAAACAAAAAG     GU AAAA    G  G   UGCAA  UUUGA CACUCGUCUUAUUUAAAUUUUUUU   AAAU               UUGUG  U    UACU UA A   |||||  ||||| ||||||||||||||||||||||||   ||||               |||||  |    |||| || U   AUGUU  AAACU GUGAGCAGAAUAAAUUUGAAAAAA   UUUA               AACAC  A    AUGA AU A GA     AA     A                        --U    AUAAUAAAUAAAAUA     UG ----    A  A
Stem-loop sequence	UGCAACGUUUGACCACUCGUCUUAUUUAAAUUUUUUUUGCAAAUAUAAAAAACAAAAAGUUGUGGUUAAAAUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUUAAAAAAGUUUAAAUAAGACGAGUGAUCAAAAAUUGUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288465.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||==|||*||||||||||=|||| targets:686   CUUGUAAUGUUUGAUCACUUGUCU   709 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget
XM_015789462.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||||||**||||||||||||||| targets:585   CUUACAACGUUUGAUCACUCGUCU   608 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group proline-, glutamic acid- and leucine-rich protein 1 (LOC4343789), mRNA	proline-, glutamic acid- and leucine-rich protein 1(LOC4343789)	coding protein	psRNATarget
AK108488.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||||||**||||||||||||||| targets:123   CUUACAACGUUUGAUCACUCGUCU   146 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-143-F11, full insert sequence	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||==|||*||||||||||=|||| targets:15   CUUGUAAUGUUUGAUCACUUGUCU   38 Target Full Sequence	2.5	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
HI403728.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||==|||*||||||||||=|||| targets:15   CUUGUAAUGUUUGAUCACUUGUCU   38 Target Full Sequence	2.5	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
JB164189.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||==|||*||||||||||=|||| targets:15   CUUGUAAUGUUUGAUCACUUGUCU   38 Target Full Sequence	2.5	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015773291.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||=||*|*||||||||||||||| targets:2151   CUUGCACUGUUUGAUCACUCGUCU   2174 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272202 (LOC9272202), mRNA	uncharacterized LOC9272202(LOC9272202)	coding protein	psRNATarget
AK109584.1	ncRNA:24   GAAU-GUUAAAAACUAGUGAGCAGA   1   =|||-||||*||||||||=|||||| targets:972   UUUAUCAAUGUUUGAUCAUUCGUCU   996 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
AK067370.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   |||==|||*|||||*||||||||| targets:965   CUUGUAAUGUUUGAACACUCGUCU   988 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013105M23, full insert sequence	NA	coding protein	psRNATarget
AK098957.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   *||=|||**||||||||||||||| targets:2690   AUUGCAACGUUUGAUCACUCGUCU   2713 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013067B02, full insert sequence	NA	coding protein	psRNATarget
XM_015772731.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   =||==|||*|||||*||||||||| targets:199   UUUGUAAUGUUUGACCACUCGUCU   222 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 6.1 (LOC4326444), mRNA	protein NRT1/ PTR FAMILY 6.1(LOC4326444)	coding protein	psRNATarget
AK069810.1	ncRNA:24   GAAUGUUAAAAACUAGUGAGCAGA   1   *||-|||*|||||||||=|||||| targets:2676   GUU-CAACUUUUGAUCAUUCGUCU   2698 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023027G23, full insert sequence	NA	coding protein	psRNATarget