Search result

BaseInfo

ncRNA ID novel_osa_miR3400
Species Oryza sativa
Class miRNA
Genome position Chr9:15130693-15130865 [-]
Reference genome IRGSP-1.0
Source SRR2040388;SRR2040401
Length 24
Mature sequence(if miRNA) 1 - AAUGUGAGAAAUGAUAGAAUGACU - 24
Stem-loop(if miRNA) --        G      C                                  CA     A  ----CAU     C    -UCC    UCA
  UCAUUUUA UAUUUC CACAUUCAUAUUGAUGUUAAUAAAUCUAGACAUA  AUGUA GU       UCUAG AUUU    ACAU   U
  |||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||| ||       ||||| ||||    ||||
  AGUAAGAU GUAAAG GUGUAAGUAUAACUACAAUUAUUUAGAUCUGUAU  UAUAU CG       AGAUC UAAG    UGUA   A
UC        A      A                                  -A     A  CCCUUAC     -    UAAU    UUU
Stem-loop sequence UCAUUUUAGUAUUUCCCACAUUCAUAUUGAUGUUAAUAAAUCUAGACAUACAAUGUAAGUCAUUCUAGCAUUUUCCACAUUCAUAUUUAUGUUAAUGAAUCUAGACAUUCCCGCAUAUAUAUAUGUCUAGAUUUAUUAACAUCAAUAUGAAUGUGAGAAAUGAUAGAAUGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015764968.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||||||
targets:1145   AGUCAUUCUAUCAUUUCUCACAUU   1168

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269766 (LOC9269766), mRNA uncharacterized LOC9269766(LOC9269766) coding protein psRNATarget
XM_015766661.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:5119   AGUCAUUCUAUCAUUUCUCAUAUU   5142

1.5 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X3, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766659.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:5086   AGUCAUUCUAUCAUUUCUCAUAUU   5109

1.5 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X1, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766663.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:4998   AGUCAUUCUAUCAUUUCUCAUAUU   5021

1.5 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X5, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766660.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:4458   AGUCAUUCUAUCAUUUCUCAUAUU   4481

1.5 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X2, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766662.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:4426   AGUCAUUCUAUCAUUUCUCAUAUU   4449

1.5 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X4, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766665.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:4169   AGUCAUUCUAUCAUUUCUCAUAUU   4192

1.5 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X7, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015766664.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:3749   AGUCAUUCUAUCAUUUCUCAUAUU   3772

1.5 PREDICTED: Oryza sativa Japonica Group glycerol-3-phosphate 2-O-acyltransferase 6 (LOC4324826), transcript variant X6, mRNA glycerol-3-phosphate 2-O-acyltransferase 6(LOC4324826) coding protein psRNATarget
XM_015790773.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||||||=|||
targets:1224   AGUCAUUCUAUCAUUUCUCAUAUU   1247

1.5 PREDICTED: Oryza sativa Japonica Group peroxidase 1-like (LOC107275918), mRNA peroxidase 1-like(LOC107275918) coding protein psRNATarget
XM_015783507.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||||||||=||||||*
targets:815   AGUCAUUCUAUCAUUUUUCACAUA   838

2.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor ERF014-like (LOC107277887), mRNA ethylene-responsive transcription factor ERF014-like(LOC107277887) coding protein psRNATarget
XM_015764779.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||||||
targets:4397   AGUCAUUCUAGCAUUUCUCACAUU   4420

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X4, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764777.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||||||
targets:3563   AGUCAUUCUAGCAUUUCUCACAUU   3586

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X2, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
AK288390.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||||||
targets:679   AGUCAUUCUAGCAUUUCUCACAUU   702

1.0 Oryza sativa Japonica Group cDNA, clone: J090027G18, full insert sequence NA coding protein psRNATarget
XM_015764776.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||||||
targets:3327   AGUCAUUCUAGCAUUUCUCACAUU   3350

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X1, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
XM_015764778.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||||||
targets:3322   AGUCAUUCUAGCAUUUCUCACAUU   3345

1.0 PREDICTED: Oryza sativa Japonica Group putative disease resistance RPP13-like protein 3 (LOC4352543), transcript variant X3, mRNA putative disease resistance RPP13-like protein 3(LOC4352543) coding protein psRNATarget
AK120148.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||||||
targets:463   AGUCAUUCUAGCAUUUCUCACAUU   486

1.0 Oryza sativa Japonica Group cDNA clone:J013029J05, full insert sequence NA coding protein psRNATarget
CT837528.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||||||
targets:828   AGUCAUUCUAGCAUUUCUCACAUU   851

1.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN037B21, full insert sequence NA coding protein psRNATarget
AK288952.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*=||||||||||||
targets:258   AGUCAUUCUAGUAUUUCUCACAUU   281

2.5 Oryza sativa Japonica Group cDNA, clone: J090083K12, full insert sequence NA coding protein psRNATarget
XM_015792577.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |||||||=||*|||||||||||||
targets:1438   AGUCAUUUUAGCAUUUCUCACAUU   1461

2.0 PREDICTED: Oryza sativa Japonica Group calcineurin subunit B (LOC4345696), transcript variant X1, mRNA calcineurin subunit B(LOC4345696) coding protein psRNATarget
AK070012.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*=||||||||||||
targets:2339   AGUCAUUCUAGUAUUUCUCACAUU   2362

2.5 Oryza sativa Japonica Group cDNA clone:J023037B16, full insert sequence NA coding protein psRNATarget
AK288811.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||=|||||
targets:1354   AGUCAUUCUAACAUUUCUUACAUU   1377

2.5 Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence NA coding protein psRNATarget
CT835116.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||||=||||
targets:804   AGUCAUUCUAACAUUUCUCGCAUU   827

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA052M05, full insert sequence NA coding protein psRNATarget
AK288502.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||=|||
targets:564   AGUCAUUCUAGCAUUUCUCAUAUU   587

2.5 Oryza sativa Japonica Group cDNA, clone: J090041D12, full insert sequence NA coding protein psRNATarget
AK070352.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||=|||||||
targets:418   AGUCAUUCUAGCAUUUUUCACAUU   441

2.5 Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence NA coding protein psRNATarget
XM_015767720.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*|||||||||=|||
targets:565   AGUCAUUCUAGCAUUUCUCAUAUU   588

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4330679 (LOC4330679), mRNA uncharacterized LOC4330679(LOC4330679) coding protein psRNATarget
AK288229.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:3665   AGUCAUUCUAGCAUUUCCCACAUU   3688

2.5 Oryza sativa Japonica Group cDNA, clone: J090012M05, full insert sequence NA coding protein psRNATarget
XM_015780916.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:4738   AGUCAUUCUAGCAUUUCCCACAUU   4761

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X1, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780918.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:4729   AGUCAUUCUAGCAUUUCCCACAUU   4752

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X3, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015780917.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:4680   AGUCAUUCUAGCAUUUCCCACAUU   4703

2.5 PREDICTED: Oryza sativa Japonica Group DExH-box ATP-dependent RNA helicase DExH7, chloroplastic (LOC9267691), transcript variant X2, mRNA DExH-box ATP-dependent RNA helicase DExH7, chloroplastic(LOC9267691) coding protein psRNATarget
XM_015783728.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:2800   AGUCAUUCUAGCAUUUCCCACAUU   2823

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9271594 (LOC9271594), transcript variant X1, mRNA uncharacterized LOC9271594(LOC9271594) coding protein psRNATarget
XM_015781780.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:3145   AGUCAUUCUAGCAUUUCCCACAUU   3168

2.5 PREDICTED: Oryza sativa Japonica Group protein ASPARTIC PROTEASE IN GUARD CELL 2 (LOC4337402), mRNA protein ASPARTIC PROTEASE IN GUARD CELL 2(LOC4337402) coding protein psRNATarget
AK102955.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:769   AGUCAUUCUAGCAUUUCCCACAUU   792

2.5 Oryza sativa Japonica Group cDNA clone:J033115G04, full insert sequence NA coding protein psRNATarget
XM_015760919.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:16   AGUCAUUCUAGCAUUUCCCACAUU   39

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4350122 (LOC4350122), mRNA uncharacterized LOC4350122(LOC4350122) coding protein psRNATarget
XM_015779937.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:980   AGUCAUUCUAGCAUUUCCCACAUU   1003

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X1, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
XM_015779938.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:888   AGUCAUUCUAGCAUUUCCCACAUU   911

2.5 PREDICTED: Oryza sativa Japonica Group small nuclear ribonucleoprotein Sm D1 (LOC4336118), transcript variant X2, mRNA small nuclear ribonucleoprotein Sm D1(LOC4336118) coding protein psRNATarget
XM_015790274.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:1963   AGUCAUUCUAACAUUUCCCACAUU   1986

2.5 PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X1, mRNA alpha-humulene synthase(LOC9270657) coding protein psRNATarget
AK099655.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:695   AGUCAUUCUAGCAUUUCCCACAUU   718

2.5 Oryza sativa Japonica Group cDNA clone:J013066C07, full insert sequence NA coding protein psRNATarget
CT831791.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |||||||||**|||||||||||||
targets:1761   AGUCAUUCUUGCAUUUCUCACAUU   1784

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241K23, full insert sequence NA coding protein psRNATarget
XM_015790275.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:1714   AGUCAUUCUAACAUUUCCCACAUU   1737

2.5 PREDICTED: Oryza sativa Japonica Group alpha-humulene synthase (LOC9270657), transcript variant X2, mRNA alpha-humulene synthase(LOC9270657) coding protein psRNATarget
XM_015760082.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:1495   AGUCAUUCUAGCAUUUCCCACAUU   1518

2.5 PREDICTED: Oryza sativa Japonica Group putative protease Do-like 14 (LOC4350193), mRNA putative protease Do-like 14(LOC4350193) coding protein psRNATarget
AK106586.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:614   AGUCAUUCUAGCAUUUCCCACAUU   637

2.5 Oryza sativa Japonica Group cDNA clone:002-111-E12, full insert sequence NA coding protein psRNATarget
XM_015782137.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:1514   AGUCAUUCUAGCAUUUCCCACAUU   1537

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339294 (LOC4339294), mRNA uncharacterized LOC4339294(LOC4339294) coding protein psRNATarget
AK287994.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:1465   AGUCAUUCUAGCAUUUCCCACAUU   1488

2.5 Oryza sativa Japonica Group cDNA, clone: J075099E21, full insert sequence NA coding protein psRNATarget
CT837490.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:837   AGUCAUUCUAGCAUUUCCCACAUU   860

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA109F07, full insert sequence NA coding protein psRNATarget
XM_015783671.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:984   AGUCAUUCUAGCAUUUCCCACAUU   1007

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339170 (LOC4339170), mRNA uncharacterized LOC4339170(LOC4339170) coding protein psRNATarget
XM_015788299.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:629   AGUCAUUCUAGCAUUUCCCACAUU   652

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X1, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788302.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:607   AGUCAUUCUAGCAUUUCCCACAUU   630

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X3, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
XM_015788300.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:598   AGUCAUUCUAGCAUUUCCCACAUU   621

2.5 PREDICTED: Oryza sativa Japonica Group GPI-anchored protein LORELEI (LOC4340837), transcript variant X2, mRNA GPI-anchored protein LORELEI(LOC4340837) coding protein psRNATarget
AK100772.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||||||||||*||||||*||||||
targets:600   AGUCAUUCUAGCAUUUCCCACAUU   623

2.5 Oryza sativa Japonica Group cDNA clone:J023120A05, full insert sequence NA coding protein psRNATarget
AK288266.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  ||*|||||||*|||||||||=|||
targets:1540   AGCCAUUCUAGCAUUUCUCAUAUU   1563

2.5 Oryza sativa Japonica Group cDNA, clone: J090016H18, full insert sequence NA coding protein psRNATarget
AK067512.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |*||||||||*||||||||||||*
targets:2266   AAUCAUUCUAACAUUUCUCACAUA   2289

2.0 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
XM_015759228.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |||*|||*||*|||||||||||||
targets:2087   AGUAAUUGUAACAUUUCUCACAUU   2110

2.0 PREDICTED: Oryza sativa Japonica Group MLO-like protein 9 (LOC4349258), mRNA MLO-like protein 9(LOC4349258) coding protein psRNATarget
XM_015795234.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |*|||||||**|||||||||||||
targets:1756   AUUCAUUCUUGCAUUUCUCACAUU   1779

2.0 PREDICTED: Oryza sativa Japonica Group glycoprotein 3-alpha-L-fucosyltransferase A (LOC4345809), mRNA glycoprotein 3-alpha-L-fucosyltransferase A(LOC4345809) coding protein psRNATarget
AK099681.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |*|||||||**|||||||||||||
targets:1765   AUUCAUUCUUGCAUUUCUCACAUU   1788

2.0 Oryza sativa Japonica Group cDNA clone:J013071F22, full insert sequence NA coding protein psRNATarget
AK072272.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |||*|||*||*|||||||||||||
targets:1827   AGUAAUUGUAACAUUUCUCACAUU   1850

2.0 Oryza sativa Japonica Group cDNA clone:J023004C21, full insert sequence NA coding protein psRNATarget
CT837839.1
ncRNA:24   UCAGUAAGAUAGUAAAGAGUGUAA   1
  |*||||||||*||||||*||||||
targets:955   AAUCAUUCUAGCAUUUCCCACAUU   978

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105C15, full insert sequence NA coding protein psRNATarget