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BaseInfo

ncRNA ID novel_osa_miR3398
Species Oryza sativa
Class miRNA
Genome position Chr9:15317685-15317867 [+]
Reference genome IRGSP-1.0
Source SRR2040388
Length 24
Mature sequence(if miRNA) 160 - ACUUGAAACAGUUUGACUUUGACC - 183
Stem-loop(if miRNA) --              C            C          AA   A            --UCA  C   GACAAA       UGAA    UAU
  UCAAAGUCAAAUUG UUUAAGUUUGAU AAGUUUGUAG  AAA AUAGUAAUAUUU     AC AAA      UUUAUUA    AAUA   U
  |||||||||||||| |||||||||||| ||||||||||  ||| ||||||||||||     || |||      |||||||    ||||
  AGUUUCAGUUUGAC AAGUUCAAACUG UUCAAAUAUC  UUU UAUCAUUAUAAA     UG UUU      AAGUAGU    UUAU   U
CC              A            A          AG   A            UAUUA  A   -AAUCA       UUAG    UAA
Stem-loop sequence UCAAAGUCAAAUUGCUUUAAGUUUGAUCAAGUUUGUAGAAAAAAAUAGUAAUAUUUUCAACCAAAGACAAAUUUAUUAUGAAAAUAUAUUUAAUUAUUGAUUUGAUGAAACUAAUUUAGUAUUAUAAAUAUUACUAUAUUUGACUAUAAACUUAGUCAAACUUGAAACAGUUUGACUUUGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015755259.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  |||||||||||||||||||=||||
targets:809   GGUCAAAGUCAAACUGUUUUAAGU   832

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA uncharacterized LOC4346670(LOC4346670) coding protein psRNATarget
XM_015794148.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||||||||*|||||||||
targets:1083   GGUCAAAGUCAAACAGUUUCAAGU   1106

1.5 PREDICTED: Oryza sativa Japonica Group clavaminate synthase-like protein At3g21360 (LOC107275812), mRNA clavaminate synthase-like protein At3g21360(LOC107275812) coding protein psRNATarget
AK241906.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  |||||||*||||||||||||||||
targets:942   GGUCAAAUUCAAACUGUUUCAAGU   965

1.0 Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence NA coding protein psRNATarget
AK242901.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||*|||||||||||||||
targets:1272   GGUCAAAGACAAACUGUUUCAAGU   1295

1.0 Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence NA coding protein psRNATarget
XM_015788305.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||*|||||||||||||||
targets:1322   GGUCAAAGACAAACUGUUUCAAGU   1345

1.0 PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA F-box/FBD/LRR-repeat protein At1g13570(LOC4340210) coding protein psRNATarget
AK121583.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||||||||||*|||||||
targets:279   GGUCAAAGUCAAACUGCUUCAAGU   302

1.5 Oryza sativa Japonica Group cDNA clone:J033037F21, full insert sequence NA coding protein psRNATarget
XM_015767191.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||||||||||*|||||||
targets:334   GGUCAAAGUCAAACUGCUUCAAGU   357

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X6, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767185.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||||||||||*|||||||
targets:368   GGUCAAAGUCAAACUGCUUCAAGU   391

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X1, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767192.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||||||||||*|||||||
targets:367   GGUCAAAGUCAAACUGCUUCAAGU   390

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X7, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767188.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||||||||||*|||||||
targets:1036   GGUCAAAGUCAAACUGCUUCAAGU   1059

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X4, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
XM_015767187.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ||||||||||||||||*|||||||
targets:1145   GGUCAAAGUCAAACUGCUUCAAGU   1168

1.5 PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X3, mRNA disease resistance protein RGA2(LOC4329024) coding protein psRNATarget
AK288358.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  |*||||||||||||||||||||||
targets:899   GCUCAAAGUCAAACUGUUUCAAGU   922

0.0 Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence NA coding protein psRNATarget
CT837874.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  |||*|||||||||||||||=||||
targets:148   GGUGAAAGUCAAACUGUUUUAAGU   171

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence NA coding protein psRNATarget
AK288440.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  |||||||*|||||||||||=||||
targets:1210   GGUCAAAAUCAAACUGUUUUAAGU   1233

2.5 Oryza sativa Japonica Group cDNA, clone: J090034G20, full insert sequence NA coding protein psRNATarget
XM_015790283.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  *|||||||||||||||*|||||||
targets:1293   AGUCAAAGUCAAACUGCUUCAAGU   1316

1.5 PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4343827), mRNA anthocyanidin reductase(LOC4343827) coding protein psRNATarget
XM_015760540.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  ***|||||*||||||||||=||||
targets:1046   ACACAAAGACAAACUGUUUUAAGU   1069

2.5 PREDICTED: Oryza sativa Japonica Group dirigent protein 19 (LOC4350075), mRNA dirigent protein 19(LOC4350075) coding protein psRNATarget
AK106793.1
ncRNA:24   CCAGUUUCAGUUUGACAAAGUUCA   1
  |*|*|||||||||||*||||||||
targets:204   GCUAAAAGUCAAACUAUUUCAAGU   227

1.5 Oryza sativa Japonica Group cDNA clone:002-116-A11, full insert sequence NA coding protein psRNATarget
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