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BaseInfo

ncRNA ID novel_osa_miR3396
Species Oryza sativa
Class miRNA
Genome position Chr9:11220051-11220101 [+]
Reference genome IRGSP-1.0
Source SRR2040388;SRR2099436;SRR2099568;SRR1556011;SRR3123651;SRR4407777;SRR4407954;SRR4407956;SRR4407960;SRR4407961;SRR1654490;SRR1738240
Length 24
Mature sequence(if miRNA) 28 - ACCAACCGGAACUAAAGAUGGCUC - 51
Stem-loop(if miRNA) --   UG         C        U
  GCU  AUCUUUAGU CCGGUUGG A
  |||  ||||||||| |||||||| A
  CGG  UAGAAAUCA GGCCAACC C
CU   --         A        A
Stem-loop sequence GCUUGAUCUUUAGUCCCGGUUGGUAACACCAACCGGAACUAAAGAUGGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288377.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  *|||*|||||||||*|||||||||
targets:1372   UAGCGAUCUUUAGUCCCGGUUGGU   1395

1.5 Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence NA coding protein psRNATarget
AK121472.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  *|*|*|||||||||||||||||||
targets:2056   CAUCGAUCUUUAGUUCCGGUUGGU   2079

0.0 Oryza sativa Japonica Group cDNA clone:J023148H10, full insert sequence NA coding protein psRNATarget
AK288796.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||||||||*|||||||||
targets:1826   GAUCGAUCUUUAGUCCCGGUUGGU   1849

1.5 Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence NA coding protein psRNATarget
AK059634.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:11   GAACAAUCAUUAGUUCUGGUUGGU   34

2.5 Oryza sativa Japonica Group cDNA clone:001-031-A07, full insert sequence NA coding protein psRNATarget
XM_015794479.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:497   GAACAAUCAUUAGUUCUGGUUGGU   520

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X8, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
AK103121.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:512   GAACAAUCAUUAGUUCUGGUUGGU   535

2.5 Oryza sativa Japonica Group cDNA clone:J033119K06, full insert sequence NA coding protein psRNATarget
XM_015794440.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:514   GAACAAUCAUUAGUUCUGGUUGGU   537

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X3, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794489.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:573   GAACAAUCAUUAGUUCUGGUUGGU   596

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X9, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794470.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:574   GAACAAUCAUUAGUUCUGGUUGGU   597

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X7, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794462.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:587   GAACAAUCAUUAGUUCUGGUUGGU   610

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X6, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794447.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:591   GAACAAUCAUUAGUUCUGGUUGGU   614

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X4, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794453.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:610   GAACAAUCAUUAGUUCUGGUUGGU   633

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X5, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794428.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:595   GAACAAUCAUUAGUUCUGGUUGGU   618

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X1, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794507.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:643   GAACAAUCAUUAGUUCUGGUUGGU   666

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X11, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794434.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:654   GAACAAUCAUUAGUUCUGGUUGGU   677

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X2, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
XM_015794498.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||*|*|||*|||||||=|||||||
targets:677   GAACAAUCAUUAGUUCUGGUUGGU   700

2.5 PREDICTED: Oryza sativa Japonica Group lipid droplet-associated hydrolase (LOC4325392), transcript variant X10, mRNA lipid droplet-associated hydrolase(LOC4325392) coding protein psRNATarget
AK121178.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ||-|*|||||||||*|||||||||
targets:1905   GA-CGAUCUUUAGUCCCGGUUGGU   1927

1.5 Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence NA coding protein psRNATarget
AK099726.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  *|**=|||||||||*|||||||||
targets:1088   AAUAUAUCUUUAGUACCGGUUGGU   1111

1.5 Oryza sativa Japonica Group cDNA clone:J013089E05, full insert sequence NA coding protein psRNATarget
AK289098.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  *||--|||||||||*|||||||||
targets:145   UAG--AUCUUUAGUCCCGGUUGGU   166

1.5 Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence NA coding protein psRNATarget
AK289098.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  *||--|||||||||*|||||||||
targets:236   UAG--AUCUUUAGUCCCGGUUGGU   257

1.5 Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence NA coding protein psRNATarget
XM_015790121.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  ***=*|||||||||*|||||||||
targets:925   UUUUAAUCUUUAGUCCCGGUUGGU   948

1.5 PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA putative disease resistance protein RGA4(LOC107281518) coding protein psRNATarget
XM_015755256.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  *|*=*|||||||||*|||||||||
targets:139   UAAUGAUCUUUAGUCCCGGUUGGU   162

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA uncharacterized LOC4346665(LOC4346665) coding protein psRNATarget
JB164382.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  |**==|||||||||*||||||||*
targets:45   GUUUUAUCUUUAGUCCCGGUUGGG   68

2.5 Sequence 2046 from Patent EP2559767 NA coding protein psRNATarget
HI403921.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  |**==|||||||||*||||||||*
targets:45   GUUUUAUCUUUAGUCCCGGUUGGG   68

2.5 Sequence 2046 from Patent EP2074227 NA coding protein psRNATarget
LQ236051.1
ncRNA:24   CUCGGUAGAAAUCAAGGCCAACCA   1
  |**==|||||||||*||||||||*
targets:45   GUUUUAUCUUUAGUCCCGGUUGGG   68

2.5 Sequence 2046 from Patent EP2985353 NA coding protein psRNATarget
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