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BaseInfo

ncRNA ID	novel_osa_miR3391
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:10165930-10166037 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	21
Mature sequence(if miRNA)	1 - AAAACCGGGUAGGACGACUCC - 21
Stem-loop(if miRNA)	--          A  A  A  C  -  AAUU    AAACUAAUGCAAUUUGACUCC   AAAACCGGGU GG CG CU CC CG    AUUA                     U   |||||||||| || || || || ||    ||||   UUUUGGCCCA UC GC GA GG GC    CGUU                     C AC          A  -  -  C  U  -AGU    UUAGCAGGAGGUUUUGGUGAC
Stem-loop sequence	AAAACCGGGUAGGACGACUCCCCGAAUUAUUAAAACUAAUGCAAUUUGACUCCUCCAGUGGUUUUGGAGGACGAUUUUGCUGACGUGGCAGCGCUAACCCGGUUUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015768563.1	ncRNA:21   CCUCAGCAGGAUGGGCCAAAA   1   ||||||||||||||||||||| targets:225   GGAGUCGUCCUACCCGGUUUU   245 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group galactoside 2-alpha-L-fucosyltransferase (LOC4330826), mRNA	galactoside 2-alpha-L-fucosyltransferase(LOC4330826)	coding protein	psRNATarget
XM_015777925.1	ncRNA:21   CCUCAGCAGGAUGGGCCAAAA   1   ||||||||||||=|||||||| targets:10   GGAGUCGUCCUAUCCGGUUUU   30 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group transcription factor RF2a-like (LOC4336273), mRNA	transcription factor RF2a-like(LOC4336273)	coding protein	psRNATarget
XM_015757318.1	ncRNA:21   CCUCAGCAGGAUGGGCCAAAA   1   |||||||||=||||||||||| targets:309   GGAGUCGUCUUACCCGGUUUU   329 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group zinc finger HIT domain-containing protein 2 (LOC4349140), mRNA	zinc finger HIT domain-containing protein 2(LOC4349140)	coding protein	psRNATarget
AK242704.1	ncRNA:21   CCUCAGCAGGAUGGGCCAAAA   1   |||||=||||||=|||||||| targets:1126   GGAGUUGUCCUAUCCGGUUUU   1146 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090039M02, full insert sequence	NA	coding protein	psRNATarget
CT831379.1	ncRNA:21   CCUCAGCAGGAUGGGCCAAAA   1   **||*|||=|||||||||||| targets:289   CAAGCCGUUCUACCCGGUUUU   309 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN083E02, full insert sequence	NA	coding protein	psRNATarget
AK108425.1	ncRNA:21   CCUCAGCAGGAUGGGCCAAAA   1   **||*|||=|||||||||||| targets:293   CAAGCCGUUCUACCCGGUUUU   313 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-143-A06, full insert sequence	NA	coding protein	psRNATarget
XM_015782584.1	ncRNA:21   CCUCAGCAGGAUGGGCCAAAA   1   **||*|||=|||||||||||| targets:307   CAAGCCGUUCUACCCGGUUUU   327 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339706 (LOC4339706), mRNA	uncharacterized LOC4339706(LOC4339706)	coding protein	psRNATarget