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BaseInfo

ncRNA ID	novel_osa_miR3390
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:23897637-23897714 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	55 - AAUAUAGACAAUGUUAGAAAGACU - 78
Stem-loop(if miRNA)	--AA           A            UAUAUC     UCA     UUUUUAGCAUU UUUAUAUUUAUA      UAGAU   U     ||||||||||| ||||||||||||      |||||     AAAGAUUGUAA AGAUAUAAAUAU      AUCUA   U UCAG           C            ------     CAA
Stem-loop sequence	AAUUUUUAGCAUUAUUUAUAUUUAUAUAUAUCUAGAUUCAUUAACAUCUAUAUAAAUAUAGACAAUGUUAGAAAGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK067363.1	ncRNA:24   UCAGAAAGAUUGUAACAGAUAUAA   1   ||*||||=||=||||||||||||| targets:964   AGACUUUUUAGCAUUGUCUAUAUU   987 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013100G02, full insert sequence	NA	coding protein	psRNATarget
CT833624.1	ncRNA:24   UCAGAAAGAUUGUAACAGAUAUAA   1   ||*|||||||=|||||||*||||| targets:1040   AGACUUUCUAGCAUUGUCCAUAUU   1063 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence	NA	coding protein	psRNATarget
XM_015777143.1	ncRNA:24   UCAGAAAGAUUGUAACAGAUAUAA   1   ||||*|||||*||||*|||||||| targets:1905   AGUCAUUCUAUCAUUUUCUAUAUU   1928 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group lecithin-cholesterol acyltransferase-like 1 (LOC4333995), mRNA	lecithin-cholesterol acyltransferase-like 1(LOC4333995)	coding protein	psRNATarget
AK071679.1	ncRNA:24   UCAGAAAGAUUGUAACAGAUAUAA   1   ||||*|||||*||||*|||||||| targets:1789   AGUCAUUCUAUCAUUUUCUAUAUU   1812 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108I08, full insert sequence	NA	coding protein	psRNATarget
XM_015786027.1	ncRNA:24   UCAGAAAGAUUGUAACAGAUAUAA   1   ||*|*|||||=|||||*||||||| targets:4278   AGACCUUCUAGCAUUGCCUAUAUU   4301 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter C family member 8 (LOC9267441), mRNA	ABC transporter C family member 8(LOC9267441)	coding protein	psRNATarget