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BaseInfo

ncRNA ID	novel_osa_miR3387
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:6070268-6070404 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	21
Mature sequence(if miRNA)	1 - UUGCAACGUUUGACUACUCGU - 21
Stem-loop(if miRNA)	--                               -AAA     A  U   UAUUUAUUUUAU     ACU   UUGCAACGUUUGACUACUCGUCUUAUUCAAA    UUUUG AA UAU            UUGUG   U   |||||||||||||||||||||||||||||||    ||||| || |||            |||||   AACGUUGCAAACUGGUGAGCAGAAUAAGUUU    AAAAC UU AUA            AACAC   U CG                               AAAA     G  C   UUUUUACUUUUC     GAA
Stem-loop sequence	UUGCAACGUUUGACUACUCGUCUUAUUCAAAAAAUUUUGAAAUUAUUAUUUAUUUUAUUUGUGACUUUAAGCACAACUUUUCAUUUUUAUACUUGCAAAAAAAAUUUGAAUAAGACGAGUGGUCAAACGUUGCAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100009.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=|||||||||||||| targets:1034   ACGAGUGGUCAAACGUUGCAA   1054 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=|||||||||||||| targets:3054   ACGAGUGGUCAAACGUUGCAA   3074 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=|||||||||||||| targets:1848   ACGAGUGGUCAAACGUUGCAA   1868 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
HI404548.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||=||||||| targets:153   ACGAGUGGUCAAAUGUUGCAA   173 Target Full Sequence	2.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||=||||||| targets:153   ACGAGUGGUCAAAUGUUGCAA   173 Target Full Sequence	2.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
JB165009.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||=||||||| targets:153   ACGAGUGGUCAAAUGUUGCAA   173 Target Full Sequence	2.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015767968.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   |=||||||||||||||||=|| targets:1580   AUGAGUAGUCAAACGUUGUAA   1600 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
XM_015767620.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=|||||||||||=|| targets:1971   ACGAGUGGUCAAACGUUGUAA   1991 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4324862 (LOC4324862), mRNA	uncharacterized LOC4324862(LOC4324862)	coding protein	psRNATarget
AK289081.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=|||||||||||=|| targets:2985   ACGAGUGGUCAAACGUUGUAA   3005 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095E02, full insert sequence	NA	coding protein	psRNATarget
AK289089.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||=||||||| targets:1448   ACGAGUGGUCAAAUGUUGCAA   1468 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence	NA	coding protein	psRNATarget
XM_015790883.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||=||||||| targets:1909   ACGAGUGGUCAAAUGUUGCAA   1929 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA	7-deoxyloganetic acid glucosyltransferase(LOC9267967)	coding protein	psRNATarget
HI403666.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||||*||| targets:147   ACGAGUGGUCAAACGUUACAA   167 Target Full Sequence	2.5	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||||*||| targets:147   ACGAGUGGUCAAACGUUACAA   167 Target Full Sequence	2.5	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
JB164127.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||||*||| targets:147   ACGAGUGGUCAAACGUUACAA   167 Target Full Sequence	2.5	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
HI403728.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||||*||| targets:153   ACGAGUGGUCAAACGUUACAA   173 Target Full Sequence	2.5	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
JB164189.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||||*||| targets:153   ACGAGUGGUCAAACGUUACAA   173 Target Full Sequence	2.5	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||||*||| targets:153   ACGAGUGGUCAAACGUUACAA   173 Target Full Sequence	2.5	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
AK288595.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||*||||| targets:809   ACGAGUGGUCAAACGGUGCAA   829 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||*||||| targets:870   ACGAGUGGUCAAACGGUGCAA   890 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK102017.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||*|=|||||||||||||| targets:1053   ACGAAUGGUCAAACGUUGCAA   1073 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=*||||||||||||| targets:1974   ACGAGUGAUCAAACGUUGCAA   1994 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=*||||||||||||| targets:2068   ACGAGUGAUCAAACGUUGCAA   2088 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
AK288920.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||*|||=|||||||||||||| targets:4050   ACAAGUGGUCAAACGUUGCAA   4070 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK288465.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   ||||||=||||||||||*||| targets:824   ACGAGUGGUCAAACGUUACAA   844 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget
XM_015780608.1	ncRNA:21   UGCUCAUCAGUUUGCAACGUU   1   |=||||=||||||||||*||| targets:1781   AUGAGUGGUCAAACGUUACAA   1801 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget