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BaseInfo

ncRNA ID	novel_osa_miR3386
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:406150-406321 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	22
Mature sequence(if miRNA)	151 - UUUUUACUUGCACUGUUUGACU - 172
Stem-loop(if miRNA)	--     A    C                       U        -UUA    UAUUAUUUAUUUUAU     A  ----       U   UUUUU CUUG ACUGUUUGACUACUCAUCUUAUU AAAAAUUU    GAAU               UUGUG UU    UACUUUA U   ||||| |||| ||||||||||||||||||||||| ||||||||    ||||               ||||| ||    ||||||| A   AAAAA GAAC UGACAAACUGGUGAGUAGAAUAA UUUUUAAA    UUUA               AACAC AA    AUGAAAU U AU     C    A                       U        CACG    UAUUUUUUGCUUUUC     A  UUUC       C
Stem-loop sequence	UUUUUACUUGCACUGUUUGACUACUCAUCUUAUUUAAAAAUUUUUAGAAUUAUUAUUUAUUUUAUUUGUGAUUUACUUUAUUAUCUAAAGUACUUUAAACACAACUUUUCGUUUUUUAUAUUUGCACAAAUUUUUUAAUAAGAUGAGUGGUCAAACAGUACAAGCAAAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837645.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =||||||||||||||||||||* targets:611   GGUCAAACAGUGCAAGUAAAAU   632 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
CT837708.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =|||||||||||||||*||||| targets:674   GGUCAAACAGUGCAAGCAAAAA   695 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =|||||||=|||||||*||||| targets:815   GGUCAAACGGUGCAAGCAAAAA   836 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =|||||||=|||||||*||||| targets:876   GGUCAAACGGUGCAAGCAAAAA   897 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK289013.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =||=||||||||||||*||||| targets:1533   GGUUAAACAGUGCAAGCAAAAA   1554 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288319.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =|||||||=*|||||||||||| targets:1854   GGUCAAACGUUGCAAGUAAAAA   1875 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK068624.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =|||||||||||||||*||||* targets:191   GGUCAAACAGUGCAAGCAAAAU   212 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK066510.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =|||||||||||||||*||||* targets:1430   GGUCAAACAGUGCAAGCAAAAU   1451 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013068L16, full insert sequence	NA	coding protein	psRNATarget
AK288203.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   =|||||||||||||||*||||* targets:1709   GGUCAAACAGUGCAAGCAAAAU   1730 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
XM_015782265.1	ncRNA:22   UCAGUUUGUCACGUUCAUUUUU   1   ***||=|||||||||*|||||| targets:558   UUACAGACAGUGCAAAUAAAAA   579 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC4337746), mRNA	1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1(LOC4337746)	coding protein	psRNATarget