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BaseInfo

ncRNA ID	novel_osa_miR3385
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:6748244-6748430 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	22
Mature sequence(if miRNA)	1 - UUAGUUUGACUUUGACCAAAGU - 22
Stem-loop(if miRNA)	--            A     -CUUCAU       CAA         AAAA   G        UCAACAAA      --UA    -    AU   UU   UUUGGUCAAAGU AAAUU       GUUUGAC   GUUUAUAGA    AUA UAAUAUUU        CAAAUU    UUAU AAAU  AUA  C   |||||||||||| |||||       |||||||   |||||||||    ||| ||||||||        ||||||    |||| ||||  |||   AAACCAGUUUCA UUUGA       CAAAUUG   CAAAUAUCU    UAU AUUAUAAA        GUUUAA    AGUA UUUA  UAU  A UG            G     UUAAAUU       AUA         GCUA   A        -UAUUAUC      UCAA    A    GU   UA
Stem-loop sequence	UUUGGUCAAAGUAAAAUUCUUCAUGUUUGACCAAGUUUAUAGAAAAAAUAGUAAUAUUUUCAACAAACAAAUUUAUUAUAAAUAUAUAUUCAAUUAUUGAUUUAAUGAAACUAAUUUGCUAUUAUAAAUAUUAAUAUAUCGUCUAUAAACAUAGUUAAACUUAAAUUAGUUUGACUUUGACCAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015755259.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:804   ACUUUGGUCAAAGUCAAACUGU   825 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346670 (LOC4346670), transcript variant X3, mRNA	uncharacterized LOC4346670(LOC4346670)	coding protein	psRNATarget
XM_015790873.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:879   ACUUUGGUCAAAGUCAAACUGU   900 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343452 (LOC4343452), mRNA	uncharacterized LOC4343452(LOC4343452)	coding protein	psRNATarget
XM_015759791.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||=||||||* targets:856   ACUUUGGUCAAAGUUAAACUAC   877 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative HVA22-like protein g (LOC9269077), transcript variant X2, mRNA	putative HVA22-like protein g(LOC9269077)	coding protein	psRNATarget
XM_015759790.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||=||||||* targets:870   ACUUUGGUCAAAGUUAAACUAC   891 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative HVA22-like protein g (LOC9269077), transcript variant X1, mRNA	putative HVA22-like protein g(LOC9269077)	coding protein	psRNATarget
AK068259.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:1268   ACUUUGGUCAAAGUCAAACUGC   1289 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013149O16, full insert sequence	NA	coding protein	psRNATarget
AK243189.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||=||||||* targets:790   ACUUUGGUCAAAGUUAAACUAC   811 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J100039G08, full insert sequence	NA	coding protein	psRNATarget
AK121583.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:274   ACUUUGGUCAAAGUCAAACUGC   295 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033037F21, full insert sequence	NA	coding protein	psRNATarget
AK288527.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||=||||||||||||* targets:594   ACUUUGGUUAAAGUCAAACUAC   615 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
XM_015767191.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:329   ACUUUGGUCAAAGUCAAACUGC   350 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X6, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767185.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:363   ACUUUGGUCAAAGUCAAACUGC   384 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X1, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767192.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:362   ACUUUGGUCAAAGUCAAACUGC   383 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X7, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767188.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:1031   ACUUUGGUCAAAGUCAAACUGC   1052 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X4, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
XM_015767187.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||||=* targets:1140   ACUUUGGUCAAAGUCAAACUGC   1161 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RGA2 (LOC4329024), transcript variant X3, mRNA	disease resistance protein RGA2(LOC4329024)	coding protein	psRNATarget
LQ236558.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||*||||||||* targets:20   ACUUUGGUCAAAUUCAAACUAC   41 Target Full Sequence	2.5	Sequence 2553 from Patent EP2985353	NA	coding protein	psRNATarget
JB164889.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||*||||||||* targets:20   ACUUUGGUCAAAUUCAAACUAC   41 Target Full Sequence	2.5	Sequence 2553 from Patent EP2559767	NA	coding protein	psRNATarget
HI404428.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||*||||||||* targets:20   ACUUUGGUCAAAUUCAAACUAC   41 Target Full Sequence	2.5	Sequence 2553 from Patent EP2074227	NA	coding protein	psRNATarget
JB164583.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||*||||||||||||||||* targets:20   ACUUGGGUCAAAGUCAAACUAC   41 Target Full Sequence	2.0	Sequence 2247 from Patent EP2559767	NA	coding protein	psRNATarget
HI404122.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||*||||||||||||||||* targets:20   ACUUGGGUCAAAGUCAAACUAC   41 Target Full Sequence	2.0	Sequence 2247 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236252.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||*||||||||||||||||* targets:20   ACUUGGGUCAAAGUCAAACUAC   41 Target Full Sequence	2.0	Sequence 2247 from Patent EP2985353	NA	coding protein	psRNATarget
AK107835.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||||||||||||||*||* targets:650   ACUUUGGUCAAAGUCAAAAUAC   671 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-133-H04, full insert sequence	NA	coding protein	psRNATarget
AK066719.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   *=||||||||||||||||||** targets:644   UUUUUGGUCAAAGUCAAACUCC   665 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013082K18, full insert sequence	NA	coding protein	psRNATarget
AK106793.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   ||||||*|*||||||||||||* targets:199   ACUUUGCUAAAAGUCAAACUAU   220 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-116-A11, full insert sequence	NA	coding protein	psRNATarget
XM_015773578.1	ncRNA:22   UGAAACCAGUUUCAGUUUGAUU   1   **||||*||||||||||||||* targets:289   UAUUUGUUCAAAGUCAAACUAC   310 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group putative F-box protein At2g02030 (LOC9271925), transcript variant X3, mRNA	putative F-box protein At2g02030(LOC9271925)	coding protein	psRNATarget