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BaseInfo

ncRNA ID	novel_osa_miR3379
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:19943235-19943404 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	22
Mature sequence(if miRNA)	149 - GUUAAACGUUGCAAGUAAAAAC - 170
Stem-loop(if miRNA)	--        A                       -             -    UAUUAUUUAUUUUAU     A    CUUU    C   UUUUGCUU UAACGUUUGACCGCUCGUCUUAU UAAUUUUUUUUUG AAAU               UUGUG CUUA    AUAU U   |||||||| ||||||||||||||||||||||| ||||||||||||| ||||               ||||| ||||    |||| A   AAAAUGAA GUUGCAAAUUGGUGAGCAGAAUA GUUAAAAAAAAAU UUUA               AACAC GAAU    UAUG C CA        C                       A             G    UAUUUUUUGCUUUUC     -    --UU    A
Stem-loop sequence	UUUUGCUUAUAACGUUUGACCGCUCGUCUUAUUAAUUUUUUUUUGAAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUAUCUACAGUAUUUUAAGCACAACUUUUCGUUUUUUAUAUUUGUAAAAAAAAAUUGAAUAAGACGAGUGGUUAAACGUUGCAAGUAAAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:22   CAAAAAUGAACGUUGCAAAUUG   1   |||||||||||||||||||=|| targets:3852   GUUUUUACUUGCAACGUUUGAC   3873 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:22   CAAAAAUGAACGUUGCAAAUUG   1   |||||||||||||||||||=|| targets:3907   GUUUUUACUUGCAACGUUUGAC   3928 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK111038.1	ncRNA:22   CAAAAAUGAACGUUGCAAAUUG   1   ||||||=||||||||||||=|| targets:490   GUUUUUGCUUGCAACGUUUGAC   511 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:22   CAAAAAUGAACGUUGCAAAUUG   1   ||||||=||||||||||||=|| targets:492   GUUUUUGCUUGCAACGUUUGAC   513 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
AK288330.1	ncRNA:22   CAAAAAUGAACGUUGCAAAUUG   1   *||||||=|||||||||||=|| targets:1100   CUUUUUAUUUGCAACGUUUGAC   1121 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090022I21, full insert sequence	NA	coding protein	psRNATarget
XM_015758393.1	ncRNA:22   CAAAAAUGAACGUUGCAAAUUG   1   *||||||=|||||||||||=|| targets:1681   CUUUUUAUUUGCAACGUUUGAC   1702 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4348660 (LOC4348660), mRNA	uncharacterized LOC4348660(LOC4348660)	coding protein	psRNATarget
AK109674.1	ncRNA:22   CAAAAAUGAACGUUGCAAAUUG   1   *||||||=|||||||||||=|| targets:1551   CUUUUUAUUUGCAACGUUUGAC   1572 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-B06, full insert sequence	NA	coding protein	psRNATarget