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BaseInfo

ncRNA ID novel_osa_miR3378
Species Oryza sativa
Class miRNA
Genome position Chr7:19731486-19731580 [+]
Reference genome IRGSP-1.0
Source SRR2040388;SRR2040393;SRR2040399;SRR2040401;SRR2040406
Length 21
Mature sequence(if miRNA) 75 - UUUGUUGCAACUUGUAGAAGU - 95
Stem-loop(if miRNA) --           A        A   A    AU     C    -  AU
  UUCUAUAAGUU UAAUAAAA UAA AAAU  AGCUG AAAU GU  G
  ||||||||||| |||||||| ||| ||||  ||||| |||| ||
  AAGAUGUUCAA GUUGUUUU AUU UUUA  UUGAU UUUA CA  A
UG           C        C   A    AU     U    U  AU
Stem-loop sequence UUCUAUAAGUUAUAAUAAAAAUAAAAAAUAUAGCUGCAAAUGUAUGAUAACUAUUUUUAGUUUAAUUUAUUACUUUUGUUGCAACUUGUAGAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK070412.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  =||||||||||||||||||||
targets:119   GCUUCUACAAGUUGCAACAAA   139

0.0 Oryza sativa Japonica Group cDNA clone:J023054E23, full insert sequence NA coding protein psRNATarget
LQ236447.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||||||||||||*|||
targets:118   ACUUCUACAAGUUGCAAAAAA   138

1.5 Sequence 2442 from Patent EP2985353 NA coding protein psRNATarget
JB164778.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||||||||||||*|||
targets:118   ACUUCUACAAGUUGCAAAAAA   138

1.5 Sequence 2442 from Patent EP2559767 NA coding protein psRNATarget
HI404317.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||||||||||||*|||
targets:118   ACUUCUACAAGUUGCAAAAAA   138

1.5 Sequence 2442 from Patent EP2074227 NA coding protein psRNATarget
AK106710.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  ||||*|=||||||||||||||
targets:2129   ACUUAUGCAAGUUGCAACAAA   2149

2.0 Oryza sativa Japonica Group cDNA clone:002-114-F03, full insert sequence NA coding protein psRNATarget
AK241681.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||=|||||*|||||||
targets:1018   ACUUCUAUAAGUUACAACAAA   1038

2.5 Oryza sativa Japonica Group cDNA, clone: J065193N01, full insert sequence NA coding protein psRNATarget
XM_015755525.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||=|||||||||*|||
targets:1065   ACUUCUAUAAGUUGCAAAAAA   1085

2.5 PREDICTED: Oryza sativa Japonica Group vegetative cell wall protein gp1-like (LOC107278466), transcript variant X4, mRNA vegetative cell wall protein gp1-like(LOC107278466) coding protein psRNATarget
XM_015755523.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||=|||||||||*|||
targets:872   ACUUCUAUAAGUUGCAAAAAA   892

2.5 PREDICTED: Oryza sativa Japonica Group vegetative cell wall protein gp1-like (LOC107278466), transcript variant X2, mRNA vegetative cell wall protein gp1-like(LOC107278466) coding protein psRNATarget
XM_015755524.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||=|||||||||*|||
targets:1065   ACUUCUAUAAGUUGCAAAAAA   1085

2.5 PREDICTED: Oryza sativa Japonica Group vegetative cell wall protein gp1-like (LOC107278466), transcript variant X3, mRNA vegetative cell wall protein gp1-like(LOC107278466) coding protein psRNATarget
XM_015755522.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |||||||=|||||||||*|||
targets:1005   ACUUCUAUAAGUUGCAAAAAA   1025

2.5 PREDICTED: Oryza sativa Japonica Group vegetative cell wall protein gp1-like (LOC107278466), transcript variant X1, mRNA vegetative cell wall protein gp1-like(LOC107278466) coding protein psRNATarget
XM_015771705.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:3471   AAUUCUACAAGUUGCAAAAAA   3491

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X14, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771704.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:3490   AAUUCUACAAGUUGCAAAAAA   3510

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X13, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771701.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:3574   AAUUCUACAAGUUGCAAAAAA   3594

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X11, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771702.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:3836   AAUUCUACAAGUUGCAAAAAA   3856

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X12, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771698.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:4537   AAUUCUACAAGUUGCAAAAAA   4557

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X8, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771696.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:4589   AAUUCUACAAGUUGCAAAAAA   4609

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X6, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771692.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:4640   AAUUCUACAAGUUGCAAAAAA   4660

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X2, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771700.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:4654   AAUUCUACAAGUUGCAAAAAA   4674

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X10, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771699.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:4673   AAUUCUACAAGUUGCAAAAAA   4693

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X9, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771694.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:4692   AAUUCUACAAGUUGCAAAAAA   4712

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X4, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771695.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:4883   AAUUCUACAAGUUGCAAAAAA   4903

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X5, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771697.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:5018   AAUUCUACAAGUUGCAAAAAA   5038

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X7, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771691.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:5140   AAUUCUACAAGUUGCAAAAAA   5160

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X1, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
XM_015771693.1
ncRNA:21   UGAAGAUGUUCAACGUUGUUU   1
  |*|||||||||||||||*|||
targets:5272   AAUUCUACAAGUUGCAAAAAA   5292

1.5 PREDICTED: Oryza sativa Japonica Group ethylene-responsive transcription factor 3 (LOC4328564), transcript variant X3, mRNA ethylene-responsive transcription factor 3(LOC4328564) coding protein psRNATarget
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