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BaseInfo

ncRNA ID	novel_osa_miR3377
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:6692072-6692188 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	20
Mature sequence(if miRNA)	1 - UAAAAGUUGAAUUUGAACUU - 20
Stem-loop(if miRNA)	--A                 C    C C  CAAC           U     G  A  UAC    UUCAAAUUCAACUUUUA AUCU G AA    AAAAAUAAAUU GACUG GA UA   G    ||||||||||||||||| |||| | ||    ||||||||||| ||||| || ||   U    AAGUUUAAGUUGAAAAU UAGA C UU    UUUUUAUUUAA UUGAU UU AU   U UUC                 A    U A  ----           U     G  G  UAA
Stem-loop sequence	AUUCAAAUUCAACUUUUACAUCUCGCAACAACAAAAAUAAAUUUGACUGGGAAUAUACGUUAAUUAGUUGUAGUUUAAUUUAUUUUUUUACUAGAUAUAAAAGUUGAAUUUGAACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288287.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   |||||*|||||||||||||| targets:4318   AAGUUAAAAUUCAACUUUUA   4337 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090018F21, full insert sequence	NA	coding protein	psRNATarget
XM_015790259.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   *||||*|||||=|||||||| targets:1690   UAGUUAAAAUUUAACUUUUA   1709 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A9 (LOC4343126), mRNA	cytochrome P450 89A9(LOC4343126)	coding protein	psRNATarget
HI404229.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   |||||*|||||||||||*|| targets:25   AAGUUGAAAUUCAACUUCUA   44 Target Full Sequence	2.5	Sequence 2354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236359.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   |||||*|||||||||||*|| targets:25   AAGUUGAAAUUCAACUUCUA   44 Target Full Sequence	2.5	Sequence 2354 from Patent EP2985353	NA	coding protein	psRNATarget
JB164690.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   |||||*|||||||||||*|| targets:25   AAGUUGAAAUUCAACUUCUA   44 Target Full Sequence	2.5	Sequence 2354 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015781215.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   |||||*|||||||||||*|| targets:828   AAGUUAAAAUUCAACUUCUA   847 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative beta-glucosidase 15 (LOC107280799), mRNA	putative beta-glucosidase 15(LOC107280799)	coding protein	psRNATarget
CT830751.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   ||*||||||||||||||*|| targets:745   AAAUUCAAAUUCAACUUCUA   764 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063A07, full insert sequence	NA	coding protein	psRNATarget
AK107231.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   ||*||||||||||||||*|| targets:1251   AAAUUCAAAUUCAACUUAUA   1270 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-E04, full insert sequence	NA	coding protein	psRNATarget
XM_015788271.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   ||*||*|||||||||||||| targets:214   AACUUAAAAUUCAACUUUUA   233 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X2, mRNA	ABC transporter G family member 28(LOC4342153)	coding protein	psRNATarget
AK241681.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   |||*|||||||||||||*|| targets:1005   AAGAUCAAAUUCAACUUCUA   1024 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065193N01, full insert sequence	NA	coding protein	psRNATarget
XM_015788270.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   ||*||*|||||||||||||| targets:214   AACUUAAAAUUCAACUUUUA   233 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 28 (LOC4342153), transcript variant X1, mRNA	ABC transporter G family member 28(LOC4342153)	coding protein	psRNATarget
AK241705.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   ||*||||||||||||||*|| targets:3006   AAAUUCAAAUUCAACUUAUA   3025 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
XM_015756201.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   *|*|||||||||||*||||| targets:450   UAUUUCAAAUUCAAAUUUUA   469 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cellulose synthase-like protein E1 (LOC4347370), transcript variant X3, mRNA	cellulose synthase-like protein E1(LOC4347370)	coding protein	psRNATarget
XM_015756200.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   *|*|||||||||||*||||| targets:458   UAUUUCAAAUUCAAAUUUUA   477 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cellulose synthase-like protein E1 (LOC4347370), transcript variant X2, mRNA	cellulose synthase-like protein E1(LOC4347370)	coding protein	psRNATarget
AK120952.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   *||*|||||||*|||||||| targets:2947   CAGGUCAAAUUAAACUUUUA   2966 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023038N03, full insert sequence	NA	coding protein	psRNATarget
AK064956.1	ncRNA:20   UUCAAGUUUAAGUUGAAAAU   1   *|*||||||||||||||*|| targets:960   CACUUCAAAUUCAACUUAUA   979 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001A06, full insert sequence	NA	coding protein	psRNATarget