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BaseInfo

ncRNA ID	novel_osa_miR3375
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:24305134-24305185 [-]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555749;SRR1556011;SRR1556016;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AAGGUUGCUAUAUUUUAGGACGGA - 24
Stem-loop(if miRNA)	--         --    UG   CAUCC   CGUCCUAAA  AUAG  ACC     A   |||||||||  ||||  |||   GCAGGAUUU  UAUC  UGG     G AG         UA    GU   AACAU
Stem-loop sequence	CGUCCUAAAAUAGUGACCCAUCCAGUACAAGGUUGCUAUAUUUUAGGACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK243059.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||||||||||||||=|| targets:1067   UCCGUCCUAAAAUAUAGCAACUUU   1090 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100014C05, full insert sequence	NA	coding protein	psRNATarget
AK289247.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||||||||||||||=|| targets:1061   UCCGUCCUAAAAUAUAGCAACUUU   1084 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J100078I23, full insert sequence	NA	coding protein	psRNATarget
XM_015793001.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||||||||||||||=|| targets:1131   UCCGUCCUAAAAUAUAGCAACUUU   1154 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group 2-oxoglutarate-dependent dioxygenase AOP3 (LOC4345583), mRNA	2-oxoglutarate-dependent dioxygenase AOP3(LOC4345583)	coding protein	psRNATarget
AK242907.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||||||||||||||=|| targets:1973   UCCGUCCUAAAAUAUAGCAACUUU   1996 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090082H20, full insert sequence	NA	coding protein	psRNATarget
AK289116.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||||||||||||||=|| targets:1973   UCCGUCCUAAAAUAUAGCAACUUU   1996 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090097H15, full insert sequence	NA	coding protein	psRNATarget
JB164358.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||=|||||||||||||* targets:19   UCCGUCCUAGAAUAUAGCAACCUA   42 Target Full Sequence	2.0	Sequence 2022 from Patent EP2559767	NA	coding protein	psRNATarget
HI403950.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||=|||||||||||||* targets:19   UCCGUCCUAGAAUAUAGCAACCUA   42 Target Full Sequence	2.0	Sequence 2075 from Patent EP2074227	NA	coding protein	psRNATarget
JB164411.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||=|||||||||||||* targets:19   UCCGUCCUAGAAUAUAGCAACCUA   42 Target Full Sequence	2.0	Sequence 2075 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236027.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||=|||||||||||||* targets:19   UCCGUCCUAGAAUAUAGCAACCUA   42 Target Full Sequence	2.0	Sequence 2022 from Patent EP2985353	NA	coding protein	psRNATarget
HI403897.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||=|||||||||||||* targets:19   UCCGUCCUAGAAUAUAGCAACCUA   42 Target Full Sequence	2.0	Sequence 2022 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236080.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||||=|||||||||||||* targets:19   UCCGUCCUAGAAUAUAGCAACCUA   42 Target Full Sequence	2.0	Sequence 2075 from Patent EP2985353	NA	coding protein	psRNATarget
AK100614.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   ||=||||||||||||||||||||* targets:1562   UCUGUCCUAAAAUAUAGCAACCUA   1585 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023108A15, full insert sequence	NA	coding protein	psRNATarget
XM_015755391.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||*|||||||||||||||| targets:941   UCCGUCCCAAAAUAUAGCAACCUU   964 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4347400 (LOC4347400), mRNA	uncharacterized LOC4347400(LOC4347400)	coding protein	psRNATarget
CT835293.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |=||||=||||||||||||||||* targets:580   UUCGUCUUAAAAUAUAGCAACCUA   603 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA003I19, full insert sequence	NA	coding protein	psRNATarget
CT837747.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||*|||||||||||||=|| targets:1061   UCCGUCCCAAAAUAUAGCAACUUU   1084 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107O19, full insert sequence	NA	coding protein	psRNATarget
AK241705.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |*|||||||||||||||=|||||| targets:3306   UACGUCCUAAAAUAUAGUAACCUU   3329 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
XM_015770109.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |=|*|||||||||||||||||=|| targets:794   UUCAUCCUAAAAUAUAGCAACUUU   817 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP15-1 (LOC4324328), transcript variant X3, mRNA	peptidyl-prolyl cis-trans isomerase FKBP15-1(LOC4324328)	coding protein	psRNATarget
XM_015769999.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |=|*|||||||||||||||||=|| targets:858   UUCAUCCUAAAAUAUAGCAACUUU   881 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group peptidyl-prolyl cis-trans isomerase FKBP15-1 (LOC4324328), transcript variant X1, mRNA	peptidyl-prolyl cis-trans isomerase FKBP15-1(LOC4324328)	coding protein	psRNATarget
XM_015757973.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||*|==||||||||||||||||| targets:62   UCCAUUUUAAAAUAUAGCAACCUU   85 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 2 (LOC4348124), transcript variant X1, mRNA	wall-associated receptor kinase 2(LOC4348124)	coding protein	psRNATarget
XM_015783917.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||*||=||||||||||||||||* targets:1670   UCCAUCUUAAAAUAUAGCAACCUA   1693 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 1-aminocyclopropane-1-carboxylate synthase 7-like (LOC107275928), mRNA	1-aminocyclopropane-1-carboxylate synthase 7-like(LOC107275928)	coding protein	psRNATarget
AK120297.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |||||||*|=|||||||||||||* targets:1004   UCCGUCCCAGAAUAUAGCAACCUA   1027 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013051O08, full insert sequence	NA	coding protein	psRNATarget
AK073675.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   *||||||||||||||||||||*|* targets:1154   CCCGUCCUAAAAUAUAGCAACAUG   1177 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033050M21, full insert sequence	NA	coding protein	psRNATarget
AK107426.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   *||||||||||||||||||||*|* targets:1233   CCCGUCCUAAAAUAUAGCAACAUG   1256 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-128-A02, full insert sequence	NA	coding protein	psRNATarget
XM_015793154.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   *||||||||||||||||||||*|* targets:1250   CCCGUCCUAAAAUAUAGCAACAUG   1273 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325639 (LOC4325639), transcript variant X1, mRNA	uncharacterized LOC4325639(LOC4325639)	coding protein	psRNATarget
CT833367.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   ||=||||*|=|||||||||||||* targets:534   UCUGUCCCAGAAUAUAGCAACCUG   557 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051O01, full insert sequence	NA	coding protein	psRNATarget
AK121526.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |==||||||*|||||||||||||* targets:1680   UUUGUCCUAUAAUAUAGCAACCUA   1703 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033030B10, full insert sequence	NA	coding protein	psRNATarget
XM_015768091.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   |==||||||*|||||||||||||* targets:1679   UUUGUCCUAUAAUAUAGCAACCUA   1702 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group mRNA cap guanine-N7 methyltransferase 2 (LOC4330921), mRNA	mRNA cap guanine-N7 methyltransferase 2(LOC4330921)	coding protein	psRNATarget
AK288345.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   **|||||*||||||*||||||||| targets:2528   GACGUCCCAAAAUAGAGCAACCUU   2551 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090023L06, full insert sequence	NA	coding protein	psRNATarget
AK063060.1	ncRNA:24   AGGCAGGAUUUUAUAUCGUUGGAA   1   ||=*|||*|=|||||||||||||* targets:539   UCUAUCCCAGAAUAUAGCAACCUA   562 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-110-F08, full insert sequence	NA	coding protein	psRNATarget
AK066050.1	ncRNA:24   AG-GCAGGAUUUUAUAUCGUUGGAA   1   ||-|*||||||||||||*||||||* targets:909   UCUCAUCCUAAAAUAUAACAACCUA   933 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013050F13, full insert sequence	NA	coding protein	psRNATarget