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BaseInfo

ncRNA ID	novel_osa_miR3371
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:8926152-8926370 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388;SRR4407954;SRR1654490;SRR1654491
Length	24
Mature sequence(if miRNA)	1 - AGAAGUAUUAAACGUAGAUUAAUG - 24
Stem-loop(if miRNA)	--         A               A     CC   U     CCUU  A                AUCUA                          C      A   U   AGAAGUAUU AACGUAGAUUAAUGA AAAAU  AUU CAUAA    GA UUAAUUCGCGAGACAA     UUGAGCCUAAUUAAUCCAUGAUUAGC UAUGUG UGC A   ||||||||| ||||||||||||||| |||||  ||| |||||    || ||||||||||||||||     |||||||||||||||||||||||||| |||||| |||   UCUUCAUAA UUGCAUCUGAUUAUU UUUUA  UAA GUAUU    CU GAUUAAGCGCUCUGUU     AAUUUGGAUUAAUUAGGUAUUAAUCG GUACAC AUG C AA         A               A     AU   C     UACU  C                AAAAA                          U      -   A
Stem-loop sequence	AGAAGUAUUAAACGUAGAUUAAUGAAAAAAUCCAUUUCAUAACCUUGAAUUAAUUCGCGAGACAAAUCUAUUGAGCCUAAUUAAUCCAUGAUUAGCCUAUGUGAUGCUACAGUACACAUGUGCUAAUUAUGGAUUAAUUAGGUUUAAAAAAAUUGUCUCGCGAAUUAGCUCUCAUUUAUGCAAUUAAUUUUAUUAUUAGUCUACGUUAAAUACUUCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288236.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   |||||=|||||||||||||||||| targets:1894   CAUUAGUCUACGUUUAAUACUUCU   1917 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||||||||||||||||||||* targets:31   UAUUAAUCUACGUUUAAUACUUCA   54 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget
AK119753.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=|||||||||||||||||* targets:2068   UAUUAGUCUACGUUUAAUACUUCA   2091 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence	NA	coding protein	psRNATarget
AK288682.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=||||=||||||||||||* targets:484   UAUUAGUCUAUGUUUAAUACUUCA   507 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090059I11, full insert sequence	NA	coding protein	psRNATarget
CT837782.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=||||=||||||||||||* targets:867   UAUUAGUCUAUGUUUAAUACUUCA   890 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244J06, full insert sequence	NA	coding protein	psRNATarget
CT837676.1	ncRNA:24   GUAAUU-AGAUGCAAAUUAUGAAGA   1   =|||||-|||||||||||||||||* targets:505   UAUUAAAUCUACGUUUAAUACUUCA   529 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028D22, full insert sequence	NA	coding protein	psRNATarget
AK288631.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=*||||||||||||||||* targets:2866   UAUUAGACUACGUUUAAUACUUCA   2889 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
AK288937.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=||||*||||||||||||* targets:10   UAUUAGUCUAAGUUUAAUACUUCA   33 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090082N15, full insert sequence	NA	coding protein	psRNATarget
AK288908.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=*||||||||||||||||* targets:809   UAUUAGACUACGUUUAAUACUUCA   832 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090081D16, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=*||||||||||||||||* targets:2454   UAUUAGACUACGUUUAAUACUUCA   2477 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
CT828685.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||=*||||||||||||||||* targets:938   UAUUAGACUACGUUUAAUACUUCA   961 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124K24, full insert sequence	NA	coding protein	psRNATarget
AK288843.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =|||==*||||||||||||||||* targets:2264   UAUUGGGCUACGUUUAAUACUUCA   2287 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090074J10, full insert sequence	NA	coding protein	psRNATarget
AK071854.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   =||||*|*|||||||||||||||* targets:664   UAUUAUUAUACGUUUAAUACUUCA   687 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023117P14, full insert sequence	NA	coding protein	psRNATarget
XM_015793069.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   ||*||||**||||||||||||||| targets:30   CAGUAAUAAACGUUUAAUACUUCU   53 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group zinc-finger homeodomain protein 10 (LOC4345673), transcript variant X1, mRNA	zinc-finger homeodomain protein 10(LOC4345673)	coding protein	psRNATarget
XM_015793070.1	ncRNA:24   GUAAUUAGAUGCAAAUUAUGAAGA   1   ||*||||**||||||||||||||| targets:31   CAGUAAUAAACGUUUAAUACUUCU   54 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group zinc-finger homeodomain protein 10 (LOC4345673), transcript variant X2, mRNA	zinc-finger homeodomain protein 10(LOC4345673)	coding protein	psRNATarget