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BaseInfo

ncRNA ID novel_osa_miR3370
Species Oryza sativa
Class miRNA
Genome position Chr6:23629702-23629800 [+]
Reference genome IRGSP-1.0
Source SRR2040388
Length 25
Mature sequence(if miRNA) 1 - AUUGCGAGACGAAUAUUUUGAGCCU - 25
Stem-loop(if miRNA) --              AUU     C       UACCAUG   -    UAU
  AUUGCGAGACGAAU   UUGAG CUAAUUA       AUU UGGC   G
  ||||||||||||||   ||||| |||||||       ||| ||||
  UGACGCUCUGCUUA   AAUUC GAUUAGU       UGA AUCG   U
UU              GAU     A       UUAUAAA   C    UGA
Stem-loop sequence AUUGCGAGACGAAUAUUUUGAGCCUAAUUAUACCAUGAUUUGGCUAUGUAGUGCUACAGUAAAUAUUUGAUUAGACUUAAUAGAUUCGUCUCGCAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288806.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=|||||||||||||||=|||
targets:1414   AGGCUUAAAAUAUUCGUCUCGUAAU   1438

1.5 Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence NA coding protein psRNATarget
AK287702.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||||||=||||||||||
targets:1357   AGGCUUAAAAUAUUUGUCUCGCAAU   1381

1.5 Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence NA coding protein psRNATarget
AK101996.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:1699   AGGCUCAAAAGAUUCGUCUCGCAAU   1723

1.0 Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence NA coding protein psRNATarget
XM_015772097.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:1917   AGGCUCAAAAGAUUCGUCUCGCAAU   1941

1.0 PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA cinnamate beta-D-glucosyltransferase(LOC4328553) coding protein psRNATarget
AK070572.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:2215   AGGCUCAAAAGAUUCGUCUCGCAAU   2239

1.0 Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:529   AGGCUCAAAAGAUUCGUCUCGCAAU   553

1.0 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:2507   AGGCUCAAAAGAUUCGUCUCGCAAU   2531

1.0 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
AK287930.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:2458   AGGCUCAAAAGAUUCGUCUCGCAAU   2482

1.0 Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence NA coding protein psRNATarget
XM_015769710.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:2938   AGGCUCAAAAGAUUCGUCUCGCAAU   2962

1.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
XM_015769709.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*||||||||||||||
targets:3072   AGGCUCAAAAGAUUCGUCUCGCAAU   3096

1.0 PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA disease resistance protein RPP13(LOC4328990) coding protein psRNATarget
CT837754.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*|||=||||||||||
targets:1366   AGGCUCAAAAGAUUUGUCUCGCAAU   1390

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence NA coding protein psRNATarget
AK103318.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*|||||||||||=||
targets:1155   AGGCUCAAAAGAUUCGUCUCGCGAU   1179

2.5 Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence NA coding protein psRNATarget
XM_015761412.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*|||||||||||=||
targets:633   AGGCUCAAAAGAUUCGUCUCGCGAU   657

2.5 PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA nucleobase-ascorbate transporter 2(LOC4325616) coding protein psRNATarget
AK067512.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*|||||||||||=||
targets:1189   AGGCUCAAAAGAUUCGUCUCGCGAU   1213

2.5 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
AK288305.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*|||||||||||||*
targets:549   AGGCUCAAAAGAUUCGUCUCGCAAA   573

2.0 Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence NA coding protein psRNATarget
XM_015773668.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||*||||||||||=|||
targets:1800   AGGCUUAAAAGAUUCGUCUCGUAAU   1824

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA uncharacterized LOC9269613(LOC9269613) coding protein psRNATarget
AK288660.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||*||||||||||=|||
targets:2421   AGGCUUAAAAGAUUCGUCUCGUAAU   2445

2.5 Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence NA coding protein psRNATarget
AK288942.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||==|||*||||||||||||||
targets:3371   AGGCUUGAAAGAUUCGUCUCGCAAU   3395

2.0 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence NA coding protein psRNATarget
LQ236633.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*||||||||||||||
targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115

1.0 Sequence 2628 from Patent EP2985353 NA coding protein psRNATarget
JB164964.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*||||||||||||||
targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115

1.0 Sequence 2628 from Patent EP2559767 NA coding protein psRNATarget
HI404503.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*||||||||||||||
targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115

1.0 Sequence 2628 from Patent EP2074227 NA coding protein psRNATarget
AK289029.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||*|||||||||||||*
targets:2219   AGGCUUAAAAGAUUCGUCUCGCAAA   2243

2.0 Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence NA coding protein psRNATarget
XM_015775081.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||||*|||||||||*||||
targets:1120   AGGCUCAAAAGAUUCGUCUCACAAU   1144

2.5 PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA methylesterase 3(LOC4324570) coding protein psRNATarget
XM_015769938.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||=|=||||*||||||||||=|||
targets:1984   AGGUUUAAAAGAUUCGUCUCGUAAU   2008

2.5 PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA OTU domain-containing protein 5-A(LOC4331162) coding protein psRNATarget
XM_015769937.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||=|=||||*||||||||||=|||
targets:2077   AGGUUUAAAAGAUUCGUCUCGUAAU   2101

2.5 PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA OTU domain-containing protein 5-A(LOC4331162) coding protein psRNATarget
AK102878.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*||||||||||||||
targets:2132   AGACUCAAAAGAUUCGUCUCGCAAU   2156

1.0 Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence NA coding protein psRNATarget
XM_015785585.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*||||||||||||||
targets:2203   AGACUCAAAAGAUUCGUCUCGCAAU   2227

1.0 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
XM_015785584.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*||||||||||||||
targets:2336   AGACUCAAAAGAUUCGUCUCGCAAU   2360

1.0 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
AK119352.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||=|=||||*||||||||||=|||
targets:2071   AGGUUUAAAAGAUUCGUCUCGUAAU   2095

2.5 Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence NA coding protein psRNATarget
AK107289.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||*||||||||*|||||
targets:2063   AGGCUUAAAAGAUUCGUCUAGCAAU   2087

2.5 Oryza sativa Japonica Group cDNA clone:002-126-B09, full insert sequence NA coding protein psRNATarget
AK119753.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||*|*||||||||||||||
targets:2014   AGGCUUAAUAAAUUCGUCUCGCAAU   2038

2.0 Oryza sativa Japonica Group cDNA clone:002-167-E02, full insert sequence NA coding protein psRNATarget
XM_015776798.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||*|||||||||||*||
targets:1990   AGGCUUAAAAGAUUCGUCUCGCUAU   2014

2.5 PREDICTED: Oryza sativa Japonica Group U11/U12 small nuclear ribonucleoprotein 65 kDa protein (LOC4332713), transcript variant X1, mRNA U11/U12 small nuclear ribonucleoprotein 65 kDa protein(LOC4332713) coding protein psRNATarget
XM_015773694.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||*|||||||||*||||
targets:843   AGGCUUAAAAGAUUCGUCUCACAAU   867

2.5 PREDICTED: Oryza sativa Japonica Group putative ubiquitin-like-specific protease 1B (LOC9268223), transcript variant X2, mRNA putative ubiquitin-like-specific protease 1B(LOC9268223) coding protein psRNATarget
AK099802.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |||||=||||*|||||||||*||||
targets:849   AGGCUUAAAAGAUUCGUCUCACAAU   873

2.5 Oryza sativa Japonica Group cDNA clone:J013098A22, full insert sequence NA coding protein psRNATarget
AK288868.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||||||||*|*|||||||||||||*
targets:4757   AGGCUCAAUAGAUUCGUCUCGCAAA   4781

3.0 Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence NA coding protein psRNATarget
AK101179.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  |*|||=||||*|||||||||||=||
targets:2726   AAGCUUAAAAGAUUCGUCUCGCGAU   2750

2.5 Oryza sativa Japonica Group cDNA clone:J033029D23, full insert sequence NA coding protein psRNATarget
HI403927.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*|||||||||*||||
targets:91   AGCCUCAAAAGAUUCGUCUCACAAU   115

2.5 Sequence 2052 from Patent EP2074227 NA coding protein psRNATarget
LQ236057.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*|||||||||*||||
targets:91   AGCCUCAAAAGAUUCGUCUCACAAU   115

2.5 Sequence 2052 from Patent EP2985353 NA coding protein psRNATarget
JB164388.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*|||||||||*||||
targets:91   AGCCUCAAAAGAUUCGUCUCACAAU   115

2.5 Sequence 2052 from Patent EP2559767 NA coding protein psRNATarget
AK072161.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*||=||||*|||||||||||||*
targets:1116   AGACUUAAAAGAUUCGUCUCGCAAA   1140

2.0 Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence NA coding protein psRNATarget
AK102033.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*||=||*|||||||||||||||*
targets:423   AGUCUUAAUAUAUUCGUCUCGCAAA   447

2.0 Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence NA coding protein psRNATarget
AK288230.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  =||||*||||*|||||||||||||*
targets:5927   GGGCUGAAAAGAUUCGUCUCGCAAA   5951

2.0 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
AK065982.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|||||||*|||||||||*||||
targets:2875   AGACUCAAAAGAUUCGUCUCACAAU   2899

2.5 Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence NA coding protein psRNATarget
CT837736.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*||=||||*|||||||||*||||
targets:158   AGACUUAAAAGAUUCGUCUCACAAU   182

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120M17, full insert sequence NA coding protein psRNATarget
AK288820.1
ncRNA:25   UCCGAGUUUUAUAAGCAGAGCGUUA   1
  ||*|*|||||*|||||||||||=||
targets:3104   AGACACAAAAGAUUCGUCUCGCGAU   3128

2.5 Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence NA coding protein psRNATarget
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