Search result

BaseInfo

ncRNA ID	novel_osa_miR3368
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:18571753-18571960 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1556011;SRR4407954;SRR4407956;SRR4407960;SRR1556020
Length	24
Mature sequence(if miRNA)	1 - AAGGUGGUGUUUGGUUGGAGGGAC - 24
Stem-loop(if miRNA)	--                        A                       AUC     AAAA     GGACUUAUACUUUUGUGAGAGGGACUAAAUUUAGUCCCU   AAGGUGGUGUUUGGUUGGAGGGAC AAAGUGGGGCUAAACUUUAGUCC   UCACA    CAUAG                                       A   |||||||||||||||||||||||| |||||||||||||||||||||||   |||||    |||||   UUCCACCACAAACCAACCUCCCUG UUUCACCCCGAUUUGAAAUCAGG   AGUGU    UUUUG                                       G GA                        A                       GAU     ----     UAUUCAGAGAUGGUAUCCCUGAAUCCCCCACAAACCCUU
Stem-loop sequence	AAGGUGGUGUUUGGUUGGAGGGACAAAAGUGGGGCUAAACUUUAGUCCAUCUCACAAAAACAUAGGGACUUAUACUUUUGUGAGAGGGACUAAAUUUAGUCCCUAGUUCCCAAACACCCCCUAAGUCCCUAUGGUAGAGACUUAUGUUUUUGUGAUAGGGACUAAAGUUUAGCCCCACUUUAGUCCCUCCAACCAAACACCACCUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT131857.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   *||||||||||||||||||||||* targets:156   AUCCCUCCAACCAAACACCACCUA   179 Target Full Sequence	1.0	Oryza sativa clone RRlibB00592 mRNA sequence	NA	coding protein	psRNATarget
AK243245.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   *||||||||||||||||||||||* targets:748   AUCCCUCCAACCAAACACCACCUA   771 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100047D23, full insert sequence	NA	coding protein	psRNATarget
XM_015782801.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   *||||||||||||||||||||||* targets:776   AUCCCUCCAACCAAACACCACCUA   799 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group serine-aspartate repeat-containing protein C (LOC4338105), mRNA	serine-aspartate repeat-containing protein C(LOC4338105)	coding protein	psRNATarget
XM_015766484.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   *||||*||||||||||||=||||| targets:2299   AUCCCACCAACCAAACACUACCUU   2322 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326084 (LOC4326084), transcript variant X2, mRNA	uncharacterized LOC4326084(LOC4326084)	coding protein	psRNATarget
XM_015766483.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   *||||*||||||||||||=||||| targets:2605   AUCCCACCAACCAAACACUACCUU   2628 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326084 (LOC4326084), transcript variant X1, mRNA	uncharacterized LOC4326084(LOC4326084)	coding protein	psRNATarget
AK100874.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   ||||||**|*|||||||||||||| targets:1209   GUCCCUGAAUCCAAACACCACCUU   1232 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023126D22, full insert sequence	NA	coding protein	psRNATarget
AK105613.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   |||=||**|*|||||||||||||| targets:198   GUCUCUGGAUCCAAACACCACCUU   221 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-200-B08, full insert sequence	NA	coding protein	psRNATarget
XM_015773401.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   |||=||**|*|||||||||||||| targets:543   GUCUCUGGAUCCAAACACCACCUU   566 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266875 (LOC9266875), transcript variant X3, mRNA	uncharacterized LOC9266875(LOC9266875)	coding protein	psRNATarget
XM_015773399.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   |||=||**|*|||||||||||||| targets:543   GUCUCUGGAUCCAAACACCACCUU   566 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266875 (LOC9266875), transcript variant X1, mRNA	uncharacterized LOC9266875(LOC9266875)	coding protein	psRNATarget
XM_015773400.1	ncRNA:24   CAGGGAGGUUGGUUUGUGGUGGAA   1   |||=||**|*|||||||||||||| targets:556   GUCUCUGGAUCCAAACACCACCUU   579 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266875 (LOC9266875), transcript variant X2, mRNA	uncharacterized LOC9266875(LOC9266875)	coding protein	psRNATarget