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BaseInfo

ncRNA ID novel_osa_miR3367
Species Oryza sativa
Class miRNA
Genome position Chr5:26174101-26174321 [-]
Reference genome IRGSP-1.0
Source SRR2040388;SRR3123648;SRR1738235
Length 19
Mature sequence(if miRNA) 203 - UCACAAAACUAUAGAUUUU - 221
Stem-loop(if miRNA) --     -AAAC        UU GAUAUUAUAUUAGAAAACUACAGAAUUAAAAUCAGUUUUAUUACAAAACUAUAACUUUUGAAACUUUAAUAUGUUAUGGAUAUAAACUC
  UCACA     UAUAGAUU  A                                                                                         U
  |||||     ||||||||  |
  AGUGU     UGUUUAAA  U                                                                                         A
AU     CUGGA        -- CACAGUUUAAAUAGAAUCUUAAUGUUUAAUUUCAUAGCAUAGUGUUUUGAUGUCUAAAUUACUAAUUUAAUAUUUUCUUGAUAUAUAAA
Stem-loop sequence UCACAAAACUAUAGAUUUUAGAUAUUAUAUUAGAAAACUACAGAAUUAAAAUCAGUUUUAUUACAAAACUAUAACUUUUGAAACUUUAAUAUGUUAUGGAUAUAAACUCUAAAAUAUAUAGUUCUUUUAUAAUUUAAUCAUUAAAUCUGUAGUUUUGUGAUACGAUACUUUAAUUUGUAAUUCUAAGAUAAAUUUGACACUAAAUUUGUAGGUCUGUGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288881.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  |||||||=|||||||||||
targets:624   AAAAUCUGUAGUUUUGUGA   642

1.5 Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence NA coding protein psRNATarget
AK288881.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:655   UAAAUCUGUAGUUUUGUGA   673

2.5 Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence NA coding protein psRNATarget
AK288881.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:744   UAAAUCUGUAGUUUUGUGA   762

2.5 Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence NA coding protein psRNATarget
AK288562.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||||||||||||||
targets:3036   UAAAUCUAUAGUUUUGUGA   3054

1.0 Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence NA coding protein psRNATarget
AK288562.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:3097   UAAAUCUGUAGUUUUGUGA   3115

2.5 Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence NA coding protein psRNATarget
AK288562.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:4087   UAAAUCUGUAGUUUUGUGA   4105

2.5 Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence NA coding protein psRNATarget
AK288562.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  |||||*|=|||||||||||
targets:4027   AAAAUAUGUAGUUUUGUGA   4045

2.5 Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence NA coding protein psRNATarget
AK288562.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  ||||*||=|||||||||||
targets:3005   AAAACCUGUAGUUUUGUGA   3023

2.5 Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence NA coding protein psRNATarget
XM_015792093.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:3455   UAAAUCUGUAGUUUUGUGA   3473

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353) coding protein psRNATarget
XM_015792093.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  ||||||||||||||||*||
targets:3395   AAAAUCUAUAGUUUUGAGA   3413

1.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353) coding protein psRNATarget
AK101635.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:3311   UAAAUCUGUAGUUUUGUGA   3329

2.5 Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence NA coding protein psRNATarget
AK101635.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  ||||||||||||||||*||
targets:3251   AAAAUCUAUAGUUUUGAGA   3269

1.5 Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence NA coding protein psRNATarget
AK101135.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:1057   UAAAUCUGUAGUUUUGUGA   1075

2.5 Oryza sativa Japonica Group cDNA clone:J033026G16, full insert sequence NA coding protein psRNATarget
AK101649.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:2340   UAAAUCUGUAGUUUUGUGA   2358

2.5 Oryza sativa Japonica Group cDNA clone:J033056H04, full insert sequence NA coding protein psRNATarget
AK066750.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||=|||||||||||
targets:1173   UAAAUCUGUAGUUUUGUGA   1191

2.5 Oryza sativa Japonica Group cDNA clone:J013074O22, full insert sequence NA coding protein psRNATarget
AK107253.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||||||||||*|||
targets:913   UAAAUCUAUAGUUUUAUGA   931

2.5 Oryza sativa Japonica Group cDNA clone:002-125-G05, full insert sequence NA coding protein psRNATarget
AK107253.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||*|||||||||||||
targets:973   UAAAUAUAUAGUUUUGUGA   991

2.0 Oryza sativa Japonica Group cDNA clone:002-125-G05, full insert sequence NA coding protein psRNATarget
AK065563.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  =||||||||*|||||||||
targets:2801   GAAAUCUAUUGUUUUGUGA   2819

2.5 Oryza sativa Japonica Group cDNA clone:J013034F04, full insert sequence NA coding protein psRNATarget
XM_015768630.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  |||||*|=|||||||||||
targets:516   AAAAUAUGUAGUUUUGUGA   534

2.5 PREDICTED: Oryza sativa Japonica Group transmembrane protein 56-B (LOC4327490), transcript variant X5, mRNA transmembrane protein 56-B(LOC4327490) coding protein psRNATarget
XM_015765845.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  =||||||||*|||||||||
targets:2222   GAAAUCUAUUGUUUUGUGA   2240

2.5 PREDICTED: Oryza sativa Japonica Group protein PLASTID TRANSCRIPTIONALLY ACTIVE 12 (LOC4325601), transcript variant X3, mRNA protein PLASTID TRANSCRIPTIONALLY ACTIVE 12(LOC4325601) coding protein psRNATarget
AK288971.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *||||||||||||||||*|
targets:3390   UAAAUCUAUAGUUUUGUUA   3408

2.5 Oryza sativa Japonica Group cDNA, clone: J090085E12, full insert sequence NA coding protein psRNATarget
AK288971.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *|||||||||*||||||||
targets:3445   UAAAUCUAUAAUUUUGUGA   3463

2.5 Oryza sativa Japonica Group cDNA, clone: J090085E12, full insert sequence NA coding protein psRNATarget
XM_015761309.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  *|||||||||*||||||||
targets:329   UAAAUCUAUAAUUUUGUGA   347

2.5 PREDICTED: Oryza sativa Japonica Group transcription elongation factor B polypeptide 1 (LOC4351227), mRNA transcription elongation factor B polypeptide 1(LOC4351227) coding protein psRNATarget
AK288887.1
ncRNA:19   UUUUAGAUAUCAAAACACU   1
  ||||**|||||||||||||
targets:2225   AAAACGUAUAGUUUUGUGA   2243

2.0 Oryza sativa Japonica Group cDNA, clone: J090079L15, full insert sequence NA coding protein psRNATarget
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