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BaseInfo

ncRNA ID	novel_osa_miR3365
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:2559993-2560133 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	21
Mature sequence(if miRNA)	121 - UUUGACUAAUUUUGUAGAAAA - 141
Stem-loop(if miRNA)	--                      UU    A      UUAACC   C         ---    AA        UC   UUUGACUAAUUUUGUAGAAAAA  UAGU AUAUUU      CAA ACUAAUAUA   UUAU  AAAUUUAU  A   ||||||||||||||||||||||  |||| ||||||      ||| |||||||||   ||||  ||||||||   AAACUGAUUGAGAUAUCUUUUU  AUCA UAUAAA      GUU UGGUUGUAU   AGUA  UUUAGAUA  A UC                      UC    C      -----U   A         CAA    -A        UC
Stem-loop sequence	UUUGACUAAUUUUGUAGAAAAAUUUAGUAAUAUUUUUAACCCAACACUAAUAUAUUAUAAAAAUUUAUUCAACUAUAGAUUUAAUGAAACUAUGUUGGUAUUGUAAAUAUCACUACUUUUUUCUAUAGAGUUAGUCAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288417.1	ncRNA:21   AAAAGAUGUUUUAAUCAGUUU   1   ||||=||=||||||||||||| targets:3215   UUUUUUAUAAAAUUAGUCAAA   3235 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090031J18, full insert sequence	NA	coding protein	psRNATarget
AK288928.1	ncRNA:21   AAAAGAUGUUUUAAUCAGUUU   1   |||||||=|=||||||||||| targets:1366   UUUUCUAUAGAAUUAGUCAAA   1386 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082F16, full insert sequence	NA	coding protein	psRNATarget
AK288527.1	ncRNA:21   AAAAGAUGUUUUAAUCAGUUU   1   |||||||||||||||*||||| targets:739   UUUUCUACAAAAUUAAUCAAA   759 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090044J18, full insert sequence	NA	coding protein	psRNATarget
AK068835.1	ncRNA:21   AAAAGAUGUUUUAAUCAGUUU   1   |||||||=|||*||||||||| targets:1064   UUUUCUAUAAACUUAGUCAAA   1084 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013158G20, full insert sequence	NA	coding protein	psRNATarget
XM_015773539.1	ncRNA:21   AAAAGAUGUUUUAAUCAGUUU   1   |||*|||||||||||*||||| targets:1685   UUUGCUACAAAAUUACUCAAA   1705 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein FAF-like, chloroplastic (LOC4333855), mRNA	protein FAF-like, chloroplastic(LOC4333855)	coding protein	psRNATarget