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BaseInfo

ncRNA ID novel_osa_miR3361
Species Oryza sativa
Class miRNA
Genome position Chr4:21410378-21410515 [-]
Reference genome IRGSP-1.0
Source SRR2040388
Length 24
Mature sequence(if miRNA) 1 - AAAAGUCUUACAUUAUAAAACGGA - 24
Stem-loop(if miRNA) --U    C               C  AC        A            U                  U
   GUUU AUAAUGUAAGACUUU UA  AUUGCUCA AUUCAUAUAGAU UUAGUGAAUCUAGACAUA A
   |||| ||||||||||||||| ||  |||||||| |||||||||||| ||||||||||||||||||
   CAAA UAUUACAUUCUGAAA AU  UAAUGGGU UAAGUAUAUUUA AAUUACUUAGAUCUGUGU U
AGG    A               A  CA        A            C                  G
Stem-loop sequence UGUUUCAUAAUGUAAGACUUUCUAACAUUGCUCAAAUUCAUAUAGAUUUUAGUGAAUCUAGACAUAUAUGUGUGUCUAGAUUCAUUAACAUUUAUAUGAAUAUGGGUAAUACUAAAAAGUCUUACAUUAUAAAACGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015769168.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||||||||||||||*
targets:2657   UCCGUUUCAUAAUGUAAGACUUUC   2680

2.0 PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA probable splicing factor 3A subunit 1(LOC4328860) coding protein psRNATarget
AK288932.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||||||||||||||*
targets:2956   UCCGUUUCAUAAUGUAAGACUUUC   2979

2.0 Oryza sativa Japonica Group cDNA, clone: J090082H22, full insert sequence NA coding protein psRNATarget
AK071927.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||||||*|||||||||||*
targets:2289   UCCGUUUUAUAUUGUAAGACUUUC   2312

2.5 Oryza sativa Japonica Group cDNA clone:J013069M04, full insert sequence NA coding protein psRNATarget
AK318573.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||||||||||||||*
targets:291   UCCGUUUCAUAAUGUAAGACUUUC   314

2.0 Oryza sativa Japonica Group cDNA, clone: J090044A16, full insert sequence NA coding protein psRNATarget
AK072611.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||||||||||||*|||||*
targets:1821   UCCGUUUUAUAAUGUAAAACUUUC   1844

2.5 Oryza sativa Japonica Group cDNA clone:J023133A01, full insert sequence NA coding protein psRNATarget
XM_015786576.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||||||||||||*|||||*
targets:1815   UCCGUUUUAUAAUGUAAAACUUUC   1838

2.5 PREDICTED: Oryza sativa Japonica Group cannabidiolic acid synthase-like 2 (LOC4341257), mRNA cannabidiolic acid synthase-like 2(LOC4341257) coding protein psRNATarget
XM_015784092.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||||||||||||||*
targets:1673   UCCGUUUCAUAAUGUAAGACUUUC   1696

2.0 PREDICTED: Oryza sativa Japonica Group serine carboxypeptidase-like 50 (LOC4339736), mRNA serine carboxypeptidase-like 50(LOC4339736) coding protein psRNATarget
AK070825.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||||||||||||||*
targets:1503   UCCGUUUCAUAAUGUAAGACUUUC   1526

2.0 Oryza sativa Japonica Group cDNA clone:J023064P05, full insert sequence NA coding protein psRNATarget
AK288617.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  ||=||||*|||||||||||||||*
targets:1111   UCUGUUUCAUAAUGUAAGACUUUC   1134

2.0 Oryza sativa Japonica Group cDNA, clone: J090054B15, full insert sequence NA coding protein psRNATarget
AK070155.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||*||||||||||||
targets:1257   UCCGUUUCAUAUUGUAAGACUUUU   1280

2.5 Oryza sativa Japonica Group cDNA clone:J023047M11, full insert sequence NA coding protein psRNATarget
XM_015767450.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||*||||||||||||
targets:1263   UCCGUUUCAUAUUGUAAGACUUUU   1286

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328324 (LOC4328324), transcript variant X1, mRNA uncharacterized LOC4328324(LOC4328324) coding protein psRNATarget
XM_015767451.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||*||||||||||||
targets:1263   UCCGUUUCAUAUUGUAAGACUUUU   1286

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328324 (LOC4328324), transcript variant X2, mRNA uncharacterized LOC4328324(LOC4328324) coding protein psRNATarget
AK068770.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||*||||||||||||
targets:1507   UCCGUUUCAUAUUGUAAGACUUUU   1530

2.5 Oryza sativa Japonica Group cDNA clone:J013169P07, full insert sequence NA coding protein psRNATarget
AK288472.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||||*||||||||||
targets:1397   UCCGUUUCAUAAUAUAAGACUUUU   1420

2.5 Oryza sativa Japonica Group cDNA, clone: J090037K20, full insert sequence NA coding protein psRNATarget
XM_015757714.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||**|||||||||||||||
targets:1497   UCCGUUUCCUAAUGUAAGACUUUU   1520

2.0 PREDICTED: Oryza sativa Japonica Group xyloglucan galactosyltransferase KATAMARI1 homolog (LOC4349334), mRNA xyloglucan galactosyltransferase KATAMARI1 homolog(LOC4349334) coding protein psRNATarget
CT832555.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||*||||||||||||
targets:1256   UCCGUUUCAUAUUGUAAGACUUUU   1279

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110J22, full insert sequence NA coding protein psRNATarget
AK106502.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|*||||||||||||||
targets:1435   UCCGUUUCACAAUGUAAGACUUUU   1458

2.0 Oryza sativa Japonica Group cDNA clone:002-105-F04, full insert sequence NA coding protein psRNATarget
CT828736.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|||*||||||||||||
targets:648   UCCGUUUCAUAUUGUAAGACUUUU   671

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA125N05, full insert sequence NA coding protein psRNATarget
AK070836.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|*|||||||||||||*
targets:1473   UCCGUUUCACAAUGUAAGACUUUC   1496

3.0 Oryza sativa Japonica Group cDNA clone:J023071O06, full insert sequence NA coding protein psRNATarget
XM_015792390.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|*|||||||||||||*
targets:1466   UCCGUUUCACAAUGUAAGACUUUC   1489

3.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342294 (LOC4342294), transcript variant X1, mRNA uncharacterized LOC4342294(LOC4342294) coding protein psRNATarget
AK066283.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|*|||||||||||||*
targets:932   UCCGUUUCACAAUGUAAGACUUUC   955

3.0 Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence NA coding protein psRNATarget
CT835628.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||||||*|*|||||||||||||*
targets:1151   UCCGUUUCACAAUGUAAGACUUUC   1174

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042P11, full insert sequence NA coding protein psRNATarget
AK067660.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |=|||||*|*|||||||||||||*
targets:2691   UUCGUUUCACAAUGUAAGACUUUC   2714

3.0 Oryza sativa Japonica Group cDNA clone:J013116C06, full insert sequence NA coding protein psRNATarget
AK068294.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  *||||||*|*|||||||||||||*
targets:1802   CCCGUUUCACAAUGUAAGACUUUC   1825

3.0 Oryza sativa Japonica Group cDNA clone:J013148J04, full insert sequence NA coding protein psRNATarget
AK059715.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  *||||||*|*|||||||||||||*
targets:15   CCCGUUUCACAAUGUAAGACUUUC   38

3.0 Oryza sativa Japonica Group cDNA clone:001-032-F10, full insert sequence NA coding protein psRNATarget
AK072999.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||*|||*|*|||||||||||||*
targets:1517   UCCAUUUCACAAUGUAAGACUUUC   1540

3.0 Oryza sativa Japonica Group cDNA clone:J023149N01, full insert sequence NA coding protein psRNATarget
CT833624.1
ncRNA:24   AGGCAAAAUAUUACAUUCUGAAAA   1
  |||*|||*|*|||||||||||||*
targets:1024   UCCAUUUCAGAAUGUAAGACUUUC   1047

3.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN046D04, full insert sequence NA coding protein psRNATarget
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