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BaseInfo

ncRNA ID novel_osa_miR3355
Species Oryza sativa
Class miRNA
Genome position Chr3:11341965-11342075 [-]
Reference genome IRGSP-1.0
Source SRR2040388
Length 24
Mature sequence(if miRNA) 88 - UUGCGACACAAAUCUUUUGAGCCU - 111
Stem-loop(if miRNA) --      C  A     U     C       UG  AUA   U A    ---G     
  UUGCGA AC AAUCU UUGAG CUAAUUA  CC   AUU G CAAU    UGCUGC
  |||||| || ||||| ||||| |||||||  ||   ||| | ||||    |||||U
  GACGCU UG UUAGA AAUUC GAUUGAU  GG   UAA C GUUA    AUGACA
UU      C  C     U     A       UA  CAG   U -    AUAA     
Stem-loop sequence UUGCGACACAAAUCUUUUGAGCCUAAUUAUGCCAUAAUUUGACAAUGUGCUGCUACAGUAAAUAAUUGCUAAUGACGGAUUAGUUAGACUUAAUAGAUUCGUCUCGCAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT837754.1
ncRNA:24   UCCGAGUUUUCUAAACACAGCGUU   1
  |||||||||||||||||*||||||
targets:1366   AGGCUCAAAAGAUUUGUCUCGCAA   1389

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full insert sequence NA coding protein psRNATarget
AK288772.1
ncRNA:24   UCCGAGUUUUCUAAACACAGCGUU   1
  |||||=|||||||||||*||||||
targets:186   AGGCUUAAAAGAUUUGUCUCGCAA   209

2.5 Oryza sativa Japonica Group cDNA, clone: J090068C09, full insert sequence NA coding protein psRNATarget