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BaseInfo

ncRNA ID novel_osa_miR3354
Species Oryza sativa
Class miRNA
Genome position Chr1:25719710-25719810 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 1 - AUUAGACUUAAUAGAUUCGUCUCG - 24
Stem-loop(if miRNA) --          U     CU      CG  AUGAUUUGAC    UGGUGCUAUA
  AGACGAAUCU UUGAG  UAAUUA  CC          AAUG          U
  |||||||||| |||||  ||||||  ||          ||||          U
  UCUGCUUAGA AAUUC  AUUAAU  GG          GUAA          A
GC          U     AG      UA  --------CA    UCGUUUACAA
Stem-loop sequence AGACGAAUCUUUUGAGCUUAAUUACGCCAUGAUUUGACAAUGUGGUGCUAUAUUAAACAUUUGCUAAUGACGGAUUAAUUAGACUUAAUAGAUUCGUCUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK101996.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||||||||
targets:1617   CGAGACGAAUCUAUUAAGUCUAAU   1640

0.0 Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence NA coding protein psRNATarget
AK241212.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||||||||
targets:472   CGAGACGAAUCUAUUAAGUCUAAU   495

0.0 Oryza sativa Japonica Group cDNA, clone: J065122M15, full insert sequence NA coding protein psRNATarget
AK287930.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||||||||
targets:2376   CGAGACGAAUCUAUUAAGUCUAAU   2399

0.0 Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence NA coding protein psRNATarget
CT830949.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  |||||||||||||||=||||||||
targets:818   CGAGACGAAUCUAUUGAGUCUAAU   841

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI219H14, full insert sequence NA coding protein psRNATarget
CT833487.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  |||||||||||||||=||||||||
targets:824   CGAGACGAAUCUAUUGAGUCUAAU   847

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI228J03, full insert sequence NA coding protein psRNATarget
AK072161.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||||||||
targets:1034   CGAGACGAAUUUAUUAAGUCUAAU   1057

1.0 Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence NA coding protein psRNATarget
AK288772.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||||||||
targets:104   CGAGACGAAUUUAUUAAGUCUAAU   127

1.0 Oryza sativa Japonica Group cDNA, clone: J090068C09, full insert sequence NA coding protein psRNATarget
CT833754.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||*|||||||||||
targets:723   CGAGACGAAUCUUUUAAGUCUAAU   746

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence NA coding protein psRNATarget
AK102878.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||*|||||
targets:2050   CGAGACGAAUCUAUUAAGCCUAAU   2073

1.5 Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence NA coding protein psRNATarget
XM_015785585.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||*|||||
targets:2121   CGAGACGAAUCUAUUAAGCCUAAU   2144

1.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
XM_015785584.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||*|||||
targets:2254   CGAGACGAAUCUAUUAAGCCUAAU   2277

1.5 PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876) coding protein psRNATarget
AK103572.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||*|||||
targets:2732   CGAGACGAAUCUAUUAAGCCUAAU   2755

1.5 Oryza sativa Japonica Group cDNA clone:J033132N13, full insert sequence NA coding protein psRNATarget
AK065982.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||||||||||*|||||
targets:2793   CGAGACGAAUCUAUUAAGCCUAAU   2816

1.5 Oryza sativa Japonica Group cDNA clone:J013045J05, full insert sequence NA coding protein psRNATarget
CT831158.1
ncRNA:24   GC--UCUGCUUAGAUAAUUCAGAUUA   1
  ||--|||||||||||||=||||||||
targets:635   CGCCAGACGAAUCUAUUGAGUCUAAU   660

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E09, full insert sequence NA coding protein psRNATarget
LQ236633.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:9   CGAGACGAAUUUAUUAAGCCUAAU   32

2.5 Sequence 2628 from Patent EP2985353 NA coding protein psRNATarget
JB164964.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:9   CGAGACGAAUUUAUUAAGCCUAAU   32

2.5 Sequence 2628 from Patent EP2559767 NA coding protein psRNATarget
HI404503.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:9   CGAGACGAAUUUAUUAAGCCUAAU   32

2.5 Sequence 2628 from Patent EP2074227 NA coding protein psRNATarget
AK061025.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  =|||||||||||*|||||||||||
targets:467   UGAGACGAAUCUUUUAAGUCUAAU   490

1.5 Oryza sativa Japonica Group cDNA clone:006-204-F04, full insert sequence NA coding protein psRNATarget
CT827964.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  =|||||||||||*|||||||||||
targets:484   UGAGACGAAUCUUUUAAGUCUAAU   507

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117C24, full insert sequence NA coding protein psRNATarget
CT837715.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:1210   CGAGACGAAUUUAUUAAGCCUAAU   1233

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI232H20, full insert sequence NA coding protein psRNATarget
AK287428.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:1798   CGAGACGAAUUUAUUAAGCCUAAU   1821

2.5 Oryza sativa Japonica Group cDNA, clone: J043010G23, full insert sequence NA coding protein psRNATarget
CT837714.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:1802   CGAGACGAAUUUAUUAAGCCUAAU   1825

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI226D21, full insert sequence NA coding protein psRNATarget
AK072341.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:2315   CGAGACGAAUUUAUUAAGCCUAAU   2338

2.5 Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence NA coding protein psRNATarget
AK102033.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  |||||=||||||||||||*|||||
targets:348   CGAGAUGAAUCUAUUAAGCCUAAU   371

2.5 Oryza sativa Japonica Group cDNA clone:J033081B10, full insert sequence NA coding protein psRNATarget
AK288948.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:447   CGAGACGAAUUUAUUAAGCCUAAU   470

2.5 Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence NA coding protein psRNATarget
AK120234.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:2425   CGAGACGAAUUUAUUAAGCCUAAU   2448

2.5 Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence NA coding protein psRNATarget
AK288942.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:3289   CGAGACGAAUUUAUUAAGCCUAAU   3312

2.5 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence NA coding protein psRNATarget
AK287702.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:1275   CGAGACGAAUUUAUUAAGCCUAAU   1298

2.5 Oryza sativa Japonica Group cDNA, clone: J065131D02, full insert sequence NA coding protein psRNATarget
AK289087.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||||||=|||||||*|||||
targets:37   CGAGACGAAUUUAUUAAGCCUAAU   60

2.5 Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence NA coding protein psRNATarget
CT837948.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||=|||||||=|||||||*|||||
targets:514   CGGGACGAAUUUAUUAAGCCUAAU   537

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C05, full insert sequence NA coding protein psRNATarget
AK287842.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  =|||||||||=|||||||*|||||
targets:1017   UGAGACGAAUUUAUUAAGCCUAAU   1040

2.5 Oryza sativa Japonica Group cDNA, clone: J065194J09, full insert sequence NA coding protein psRNATarget
XM_015775081.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  =|||||||||=|||||||*|||||
targets:1038   UGAGACGAAUUUAUUAAGCCUAAU   1061

2.5 PREDICTED: Oryza sativa Japonica Group methylesterase 3 (LOC4324570), mRNA methylesterase 3(LOC4324570) coding protein psRNATarget
AK288328.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  =|||||*|||=|||||||||||||
targets:246   UGAGACAAAUUUAUUAAGUCUAAU   269

2.0 Oryza sativa Japonica Group cDNA, clone: J090022I04, full insert sequence NA coding protein psRNATarget
AK100778.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  =|||||||||=|||||||*|||||
targets:1514   UGAGACGAAUUUAUUAAGCCUAAU   1537

2.5 Oryza sativa Japonica Group cDNA clone:J023120F15, full insert sequence NA coding protein psRNATarget
XM_015791314.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  ||||||*|||||*|||||||||||
targets:1879   CGAGACAAAUCUUUUAAGUCUAAU   1902

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4343872 (LOC4343872), transcript variant X7, mRNA uncharacterized LOC4343872(LOC4343872) coding protein psRNATarget
AK067512.1
ncRNA:24   GC--UCUGCUUAGAUAAUUCAGAUUA   1
  ||--||||||||=|||||||*|||||
targets:1104   CGCAAGACGAAUUUAUUAAGCCUAAU   1129

2.5 Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence NA coding protein psRNATarget
AK288236.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  |||*|=||||||*|||||||||||
targets:1261   CGAAAUGAAUCUUUUAAGUCUAAU   1284

2.5 Oryza sativa Japonica Group cDNA, clone: J090013E07, full insert sequence NA coding protein psRNATarget
AK069221.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  |||*||||||=|||||||*|||||
targets:522   CGAUACGAAUUUAUUAAGCCUAAU   545

2.5 Oryza sativa Japonica Group cDNA clone:J023018E21, full insert sequence NA coding protein psRNATarget
AK068143.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  |*||||||||=|||||||*|||||
targets:1149   CUAGACGAAUUUAUUAAGCCUAAU   1172

2.5 Oryza sativa Japonica Group cDNA clone:J013134C06, full insert sequence NA coding protein psRNATarget
XM_015791223.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  |||*||||||=|||||||*|||||
targets:1680   CGAUACGAAUUUAUUAAGCCUAAU   1703

2.5 PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g01970 (LOC4344187), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At1g01970(LOC4344187) coding protein psRNATarget
AK242584.1
ncRNA:24   GCUCUGCUUAGAUAAUUCAGAUUA   1
  =||*||||||=|||||||*|||||
targets:2478   UGACACGAAUUUAUUAAGCCUAAU   2501

2.5 Oryza sativa Japonica Group cDNA, clone: J090010K24, full insert sequence NA coding protein psRNATarget
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