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BaseInfo

ncRNA ID	novel_osa_miR3352
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:27819455-27819596 [+]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR1300837
Length	19
Mature sequence(if miRNA)	124 - AAGACGGAUGAUCAAACGU - 142
Stem-loop(if miRNA)	--      C           UU        UGGU         CAAAG    -AA   AA    AUAA      U   GUUUGA CAUUCGUUUUA  UAGAAAUU    GUAAAUAUG     UUAU   GUU  GACU    UUUAUU A   |||||| |||||||||||  ||||||||    |||||||||     ||||   |||  ||||    ||||||   CAAACU GUAGGCAGAAU  AUUUUUAA    UAUUUGUAU     AAUA   CAA  CUGA    AAAUAG A UG      A           -U        --UU         ---UA    AAA   CA    -ACA      U
Stem-loop sequence	GUUUGACCAUUCGUUUUAUUUAGAAAUUUGGUGUAAAUAUGCAAAGUUAUAAGUUAAGACUAUAAUUUAUUUAAUGAUAAAACAAGUCACAACAAAAUAAAUUAUGUUUAUUUAAUUUUUAUUAAGACGGAUGAUCAAACGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064773.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||||||=|||||| targets:2705   AUGUUUGAUCAUUCGUCUU   2723 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||||||=|||||| targets:685   AUGUUUGAUCAUUCGUCUU   703 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK288529.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   ||||||||*|||||||||| targets:82   ACGUUUGACCAUCCGUCUU   100 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
XM_015792475.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   ||||||||*|||||||||| targets:2616   ACGUUUGACCAUCCGUCUU   2634 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792473.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   ||||||||*|||||||||| targets:2602   ACGUUUGACCAUCCGUCUU   2620 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
AK288811.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   ||||||||*|||||||||| targets:216   ACGUUUGACCAUCCGUCUU   234 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence	NA	coding protein	psRNATarget
AK069810.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   ||*|||||||||=|||||| targets:2681   ACUUUUGAUCAUUCGUCUU   2699 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023027G23, full insert sequence	NA	coding protein	psRNATarget
XM_015759234.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||*|||||||||| targets:2377   AUGUUUGACCAUCCGUCUU   2395 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X1, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759236.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||*|||||||||| targets:2374   AUGUUUGACCAUCCGUCUU   2392 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X3, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759235.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||*|||||||||| targets:2362   AUGUUUGACCAUCCGUCUU   2380 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X2, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015759237.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||*|||||||||| targets:1756   AUGUUUGACCAUCCGUCUU   1774 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group phosphoglycerate kinase (LOC4348728), transcript variant X5, mRNA	phosphoglycerate kinase(LOC4348728)	coding protein	psRNATarget
XM_015773683.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||||||||*|||| targets:824   AUGUUUGAUCAUCCAUCUU   842 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group splicing factor 3A subunit 2 (LOC9271815), mRNA	splicing factor 3A subunit 2(LOC9271815)	coding protein	psRNATarget
AK110606.1	ncRNA:19   UGCAAACUAGUAGGCAGAA   1   |=||||||||||||*|||| targets:814   AUGUUUGAUCAUCCAUCUU   832 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-168-G11, full insert sequence	NA	coding protein	psRNATarget