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BaseInfo

ncRNA ID	novel_osa_miR3351
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:22019556-22019641 [-]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR2098557;SRR2099568;SRR2857730;SRR1300837;SRR1738222;SRR1738241
Length	24
Mature sequence(if miRNA)	1 - AUGGGUAAUGCUAGAAAGUCUUAC - 24
Stem-loop(if miRNA)	--                     CG  A   A      GAAUG   AAGACUUUCUAGCAUUGCCCA  UU AUA AGAUAU     A   |||||||||||||||||||||  || ||| ||||||   UUCUGAAAGAUCGUAAUGGGU  AA UAU UUUAUA     A CA                     AU  G   A      AAUCU
Stem-loop sequence	AAGACUUUCUAGCAUUGCCCACGUUAAUAAAGAUAUGAAUGAAUCUAAAUAUUUAUAUGAAUAUGGGUAAUGCUAGAAAGUCUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015795868.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||=||||* targets:1158   GUAAGACUUUCUAGCAUUGCCCAC   1181 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277671 (LOC107277671), mRNA	uncharacterized LOC107277671(LOC107277671)	coding protein	psRNATarget
AK066283.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||=||||* targets:945   GUAAGACUUUCUAGCAUUGCCCAC   968 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013063D15, full insert sequence	NA	coding protein	psRNATarget
XM_015792390.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||||=||* targets:1479   GUAAGACUUUCUAGCAUUACUCAC   1502 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342294 (LOC4342294), transcript variant X1, mRNA	uncharacterized LOC4342294(LOC4342294)	coding protein	psRNATarget
AK070836.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||||=||* targets:1486   GUAAGACUUUCUAGCAUUACUCAC   1509 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023071O06, full insert sequence	NA	coding protein	psRNATarget
AK119344.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||=||||* targets:1161   GUAAGACUUUCUAGCAUUGCCCAC   1184 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-E01, full insert sequence	NA	coding protein	psRNATarget
XM_015769168.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||=||||* targets:2670   GUAAGACUUUCUAGCAUUGCCCAC   2693 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable splicing factor 3A subunit 1 (LOC4328860), transcript variant X3, mRNA	probable splicing factor 3A subunit 1(LOC4328860)	coding protein	psRNATarget
XM_015766553.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||*||||| targets:525   GUAAGACUUUCUAGCAUUUCCCAU   548 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X7, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766552.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||*||||| targets:1715   GUAAGACUUUCUAGCAUUUCCCAU   1738 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X6, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766549.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||*||||| targets:2329   GUAAGACUUUCUAGCAUUUCCCAU   2352 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766551.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||*||||| targets:2695   GUAAGACUUUCUAGCAUUUCCCAU   2718 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X5, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766550.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||*||||| targets:2695   GUAAGACUUUCUAGCAUUUCCCAU   2718 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X4, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
XM_015766546.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||||||||||||||||*||||| targets:2695   GUAAGACUUUCUAGCAUUUCCCAU   2718 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase IRK (LOC4327614), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase IRK(LOC4327614)	coding protein	psRNATarget
AK071625.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *||||||||||||||||||||||* targets:1302   AUAAGACUUUCUAGCAUUACCCAC   1325 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023106F16, full insert sequence	NA	coding protein	psRNATarget
AK073998.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *||||||||||||||||||||||* targets:1508   AUAAGACUUUCUAGCAUUACCCAC   1531 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033071H21, full insert sequence	NA	coding protein	psRNATarget
AK068435.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *||||||||||||||||||||||* targets:1574   AUAAGACUUUCUAGCAUUACCCAC   1597 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013155N15, full insert sequence	NA	coding protein	psRNATarget
CT835594.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:381   AUAAGACUUUCUAGCAUUGCCCAC   404 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN021O24, full insert sequence	NA	coding protein	psRNATarget
XM_015765335.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:1193   AUAAGACUUUCUAGCAUUGCCCAC   1216 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X2, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
CT837661.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:1193   AUAAGACUUUCUAGCAUUGCCCAC   1216 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence	NA	coding protein	psRNATarget
XM_015765333.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:2092   AUAAGACUUUCUAGCAUUGCCCAC   2115 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X1, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
XM_015765337.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:2707   AUAAGACUUUCUAGCAUUGCCCAC   2730 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group light-inducible protein CPRF2-like (LOC107276775), transcript variant X5, mRNA	light-inducible protein CPRF2-like(LOC107276775)	coding protein	psRNATarget
XM_015787709.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:529   AUAAGACUUUCUAGCAUUGCCCAC   552 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X1, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
XM_015787712.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:529   AUAAGACUUUCUAGCAUUGCCCAC   552 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340081 (LOC4340081), transcript variant X4, mRNA	uncharacterized LOC4340081(Os06g0142000)	coding protein	psRNATarget
XM_015763234.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||||||||||=||||* targets:6280   AUAAGACUUUCUAGCAUUGCCCAC   6303 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box protein At5g25290 (LOC4326973), transcript variant X1, mRNA	F-box protein At5g25290(LOC4326973)	coding protein	psRNATarget
XM_015758483.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||*|||||||||=||||||||| targets:1013   AUAAAACUUUCUAGUAUUACCCAU   1036 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277697 (LOC107277697), transcript variant X1, mRNA	uncharacterized LOC107277697(LOC107277697)	coding protein	psRNATarget
XM_015786576.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||*|||||||||||||=||||* targets:1828   GUAAAACUUUCUAGCAUUGCCCAC   1851 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cannabidiolic acid synthase-like 2 (LOC4341257), mRNA	cannabidiolic acid synthase-like 2(LOC4341257)	coding protein	psRNATarget
AK072611.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   ||||*|||||||||||||=||||* targets:1834   GUAAAACUUUCUAGCAUUGCCCAC   1857 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023133A01, full insert sequence	NA	coding protein	psRNATarget
AK066417.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||*|||||=||||||||||||| targets:2222   AUAAAACUUUUUAGCAUUACCCAU   2245 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013067F20, full insert sequence	NA	coding protein	psRNATarget
XM_015788424.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||*|||||=||||||||||||| targets:2587   AUAAAACUUUUUAGCAUUACCCAU   2610 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group protein NSP-INTERACTING KINASE 1 (LOC4340743), mRNA	protein NSP-INTERACTING KINASE 1(LOC4340743)	coding protein	psRNATarget
AK099933.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||||||||*||||||||||||* targets:350   AUAAGACUUUAUAGCAUUACCCAC   373 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013119E02, full insert sequence	NA	coding protein	psRNATarget
XM_015757225.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||*|||||||||||||=||||* targets:2284   AUAAAACUUUCUAGCAUUGCCCAC   2307 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g08610 (LOC4348896), mRNA	pentatricopeptide repeat-containing protein At1g08610(LOC4348896)	coding protein	psRNATarget
AK103437.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   *|||*|||||||||||||=||||* targets:2356   AUAAAACUUUCUAGCAUUGCCCAC   2379 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033129C05, full insert sequence	NA	coding protein	psRNATarget
AK288826.1	ncRNA:24   CAUUCUGAAAGAUCGUAAUGGGUA   1   |*|*||||||||||||||=||||* targets:1364   GGAUGACUUUCUAGCAUUGCCCAC   1387 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090073I23, full insert sequence	NA	coding protein	psRNATarget