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BaseInfo

ncRNA ID	novel_osa_miR3348
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:8255632-8255758 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	104 - UUGUAGUUUUGUGAUAAAUGAAGA - 127
Stem-loop(if miRNA)	--                           A                              AG    UUCAUUUAUCAUAAAACUAUAGGUUUA UGUCUUCAUUAUCACAAAACUACAGGUUUU  CA   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |U   AAGUAAAUAGUGUUUUGAUGUUUAAAU ACAGAGGUAAUAGUGUUUUGAUGUCCAAAA  GU AG                           C                              CU
Stem-loop sequence	UUCAUUUAUCAUAAAACUAUAGGUUUAAUGUCUUCAUUAUCACAAAACUACAGGUUUUAGCAUUGUCAAAACCUGUAGUUUUGUGAUAAUGGAGACACUAAAUUUGUAGUUUUGUGAUAAAUGAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK101135.1	ncRNA:24   AGAA---GUA-AAUAGUGUUUUGAUGUU   1   |=||---||*-||||||||||||||||| targets:734   UUUUGACCAAAUUAUCACAAAACUACAA   761 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033026G16, full insert sequence	NA	coding protein	psRNATarget
AK101635.1	ncRNA:24   AGAAGUAAAUAGUGUUUUGAUGUU   1   *****||||||||||||||||||= targets:3060   AACAAAUUUAUCACAAAACUACAG   3083 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence	NA	coding protein	psRNATarget
AK101635.1	ncRNA:24   AGAA-----GUAAAUAGUGUUUUGAUGUU   1   *=||-----=||*|||||||||||||||= targets:3024   AUUUAAGGAUAUAUAUCACAAAACUACAG   3052 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence	NA	coding protein	psRNATarget
XM_015792093.1	ncRNA:24   AGAAGUAAAUAGUGUUUUGAUGUU   1   *****||||||||||||||||||= targets:3204   AACAAAUUUAUCACAAAACUACAG   3227 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353)	coding protein	psRNATarget
XM_015792093.1	ncRNA:24   AGAA-----GUAAAUAGUGUUUUGAUGUU   1   *=||-----=||*|||||||||||||||= targets:3168   AUUUAAGGAUAUAUAUCACAAAACUACAG   3196 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353)	coding protein	psRNATarget
AK288881.1	ncRNA:24   AGAAGUAAAUAGUGUUUUGAUGUU   1   *||**||||||||=|||||||||= targets:464   GCUAAAUUUAUCAUAAAACUACAG   487 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence	NA	coding protein	psRNATarget
AK288562.1	ncRNA:24   AGAAGUAAAUAGUGUUUUGAUGUU   1   *|***||||||||||||||||||* targets:3808   ACCAAAUUUAUCACAAAACUACAC   3831 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090047L17, full insert sequence	NA	coding protein	psRNATarget
XM_015761309.1	ncRNA:24   AGAAGUAAAUAGUGUUUUGAUGUU   1   **|**|||||||||||||=||||* targets:231   CAUAAAUUUAUCACAAAAUUACAU   254 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group transcription elongation factor B polypeptide 1 (LOC4351227), mRNA	transcription elongation factor B polypeptide 1(LOC4351227)	coding protein	psRNATarget