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BaseInfo

ncRNA ID	novel_osa_miR3347
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:17472391-17472468 [+]
Reference genome	IRGSP-1.0
Source	SRR1555747;SRR1555751;SRR1556018;SRR1556020
Length	22
Mature sequence(if miRNA)	57 - AGGACGGCGCCAGCCUCUCUGG - 78
Stem-loop(if miRNA)	--AGCAU          C            -  C   UCG        GGCUGGCGCC UCCUCCUGCCAC GU GGU   C        |||||||||| |||||||||||| || |||        CCGACCGCGG AGGAGGACGGUG CA CCG   G GGUCUCU          C            G  -   CGU
Stem-loop sequence	AGCAUGGCUGGCGCCCUCCUCCUGCCACGUCGGUUCGCGUGCGCCACGGUGGCAGGAGGACGGCGCCAGCCUCUCUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288284.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   |||||||||||||||||||||* targets:1473   CCAGAGAGGCUGGCGCCGUCCC   1494 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090018D15, full insert sequence	NA	coding protein	psRNATarget
AK288284.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   ||||||*|||||||||||||*| targets:289   CCAGAGUGGCUGGCGCCGUCAU   310 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090018D15, full insert sequence	NA	coding protein	psRNATarget
XM_015789073.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   ||||||*||||||||||||*|| targets:1522   CCAGAGUGGCUGGCGCCGUACU   1543 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group methyltransferase-like protein 6 (LOC4343016), transcript variant X7, mRNA	methyltransferase-like protein 6(LOC4343016)	coding protein	psRNATarget
XM_015786427.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   |==|=||*|||||||||||||* targets:1046   CUGGGGAAGCUGGCGCCGUCCG   1067 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized membrane protein YjcL (LOC4339871), transcript variant X1, mRNA	uncharacterized membrane protein YjcL(LOC4339871)	coding protein	psRNATarget
XM_015786428.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   |==|=||*|||||||||||||* targets:1040   CUGGGGAAGCUGGCGCCGUCCG   1061 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized membrane protein YjcL (LOC4339871), transcript variant X2, mRNA	uncharacterized membrane protein YjcL(LOC4339871)	coding protein	psRNATarget
AK068804.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   |==|=||*|||||||||||||* targets:980   CUGGGGAAGCUGGCGCCGUCCG   1001 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013161L13, full insert sequence	NA	coding protein	psRNATarget
AK098965.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   |==|=||*|||||||||||||* targets:980   CUGGGGAAGCUGGCGCCGUCCG   1001 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013075G08, full insert sequence	NA	coding protein	psRNATarget
AK066804.1	ncRNA:22   GGUCUCUCCGACCGCGGCAGGA   1   |==|=||*|||||||||||||* targets:885   CUGGGGAAGCUGGCGCCGUCCG   906 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013078I02, full insert sequence	NA	coding protein	psRNATarget