Search result

BaseInfo

ncRNA ID	novel_osa_miR3344
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:3465234-3465342 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388;SRR1738237
Length	22
Mature sequence(if miRNA)	88 - UACGAGACGAAUCUUUUGAGCU - 109
Stem-loop(if miRNA)	--UA            U     CU       A    G   UGACAAUAUAG   U     CGAGACGAAUCU UUGAG  UAAUUAA CCAU AUU           UGC A     |||||||||||| |||||  ||||||| |||| |||           |||     GCUCUGCUUAGA AAUUC  AUUAAUU GGUA UAA           AUG C UGUC            U     AG       A    G   -UUAUUUACAA   A
Stem-loop sequence	UACGAGACGAAUCUUUUGAGCUUAAUUAAACCAUGAUUUGACAAUAUAGUGCUACAGUAAACAUUUAUUAAUGAUGGAUUAAUUAGACUUAAUAGAUUCGUCUCGCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773668.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||||||||||||||| targets:1801   GGCUUAAAAGAUUCGUCUCGUA   1822 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269613 (LOC9269613), mRNA	uncharacterized LOC9269613(LOC9269613)	coding protein	psRNATarget
AK121199.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =||||||||||||||||||||= targets:1469   GGCUCAAAAGAUUCGUCUCGUG   1490 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023087G06, full insert sequence	NA	coding protein	psRNATarget
AK288660.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||||||||||||||| targets:2422   GGCUUAAAAGAUUCGUCUCGUA   2443 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090057N05, full insert sequence	NA	coding protein	psRNATarget
AK288647.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||||||||||||||| targets:2096   GGCUUAAAAGAUUCGUCUCGUA   2117 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090056K16, full insert sequence	NA	coding protein	psRNATarget
CT833754.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||||||||||||||= targets:807   GGCUUAAAAGAUUCGUCUCGUG   828 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI026E11, full insert sequence	NA	coding protein	psRNATarget
AK062636.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||||||||||||||= targets:805   GGCUUAAAAGAUUCGUCUCGUG   826 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-105-D02, full insert sequence	NA	coding protein	psRNATarget
XM_015790304.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||||||||||||||= targets:813   GGCUUAAAAGAUUCGUCUCGUG   834 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group RING-H2 finger protein ATL45 (LOC4344335), mRNA	RING-H2 finger protein ATL45(LOC4344335)	coding protein	psRNATarget
XM_015769938.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|=|=||||||||||||||||| targets:1985   GGUUUAAAAGAUUCGUCUCGUA   2006 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X2, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
XM_015769937.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|=|=||||||||||||||||| targets:2078   GGUUUAAAAGAUUCGUCUCGUA   2099 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group OTU domain-containing protein 5-A (LOC4331162), transcript variant X1, mRNA	OTU domain-containing protein 5-A(LOC4331162)	coding protein	psRNATarget
AK119352.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|=|=||||||||||||||||| targets:2072   GGUUUAAAAGAUUCGUCUCGUA   2093 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:001-131-F04, full insert sequence	NA	coding protein	psRNATarget
AK120109.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=|||||||||||||=||| targets:1967   GGCUUAAAAGAUUCGUCUUGUA   1988 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013023O17, full insert sequence	NA	coding protein	psRNATarget
AK067087.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=|||||||||||||=||| targets:1966   GGCUUAAAAGAUUCGUCUUGUA   1987 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013095A19, full insert sequence	NA	coding protein	psRNATarget
AK121113.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGC-AU   1   =|||||||||||||||||||-|| targets:2708   GGCUCAAAAGAUUCGUCUCGAUA   2730 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023073I18, full insert sequence	NA	coding protein	psRNATarget
AK101996.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:1700   GGCUCAAAAGAUUCGUCUCGCA   1721 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence	NA	coding protein	psRNATarget
XM_015772097.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:1918   GGCUCAAAAGAUUCGUCUCGCA   1939 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA	cinnamate beta-D-glucosyltransferase(LOC4328553)	coding protein	psRNATarget
AK070572.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:2216   GGCUCAAAAGAUUCGUCUCGCA   2237 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:530   GGCUCAAAAGAUUCGUCUCGCA   551 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK120234.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:2508   GGCUCAAAAGAUUCGUCUCGCA   2529 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence	NA	coding protein	psRNATarget
AK287930.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:2459   GGCUCAAAAGAUUCGUCUCGCA   2480 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:550   GGCUCAAAAGAUUCGUCUCGCA   571 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
XM_015769710.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:2939   GGCUCAAAAGAUUCGUCUCGCA   2960 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget
XM_015769709.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*| targets:3073   GGCUCAAAAGAUUCGUCUCGCA   3094 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget
AK103318.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*= targets:1156   GGCUCAAAAGAUUCGUCUCGCG   1177 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
XM_015761412.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*= targets:634   GGCUCAAAAGAUUCGUCUCGCG   655 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA	nucleobase-ascorbate transporter 2(LOC4325616)	coding protein	psRNATarget
AK067512.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||||||||||||||||||*= targets:1190   GGCUCAAAAGAUUCGUCUCGCG   1211 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
CT837948.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||||||||||||*|| targets:597   GGCUUAAAAGAUUCGUCUCAUA   618 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008C05, full insert sequence	NA	coding protein	psRNATarget
AK288806.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||||*|||||||||||| targets:1415   GGCUUAAAAUAUUCGUCUCGUA   1436 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090071K16, full insert sequence	NA	coding protein	psRNATarget
AK072341.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=|||||||||*||||||| targets:2390   GGCUUAAAAGAUUCAUCUCGUA   2411 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023052M08, full insert sequence	NA	coding protein	psRNATarget
AK289029.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=|||||||||||||||*| targets:2220   GGCUUAAAAGAUUCGUCUCGCA   2241 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence	NA	coding protein	psRNATarget
AK289087.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||=||*|||||||||||||| targets:4330   GGCUUAAUAGAUUCGUCUCGUA   4351 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090095K03, full insert sequence	NA	coding protein	psRNATarget
AK102878.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||||||||||||||||||*| targets:2132   AGACUCAAAAGAUUCGUCUCGCA   2154 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence	NA	coding protein	psRNATarget
XM_015785585.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||||||||||||||||||*| targets:2203   AGACUCAAAAGAUUCGUCUCGCA   2225 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
XM_015785584.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||||||||||||||||||*| targets:2336   AGACUCAAAAGAUUCGUCUCGCA   2358 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
AK103177.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||||||||||||||||||*= targets:1319   AGACUCAAAAGAUUCGUCUCGCG   1341 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||||||||||||||||||*= targets:1675   AGACUCAAAAGAUUCGUCUCGCG   1697 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
AK287827.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||||||||||||||||||*= targets:2076   AGACUCAAAAGAUUCGUCUCGCG   2098 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence	NA	coding protein	psRNATarget
AK073850.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||||||||||||||||||*= targets:1658   AGACUCAAAAGAUUCGUCUCGCG   1680 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:22   UC-GAGUUUUCUAAGCAGAGCAU   1   ||-||=|||||||||||||||*| targets:1116   AGACUUAAAAGAUUCGUCUCGCA   1138 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
AK061474.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   ***||=|||||||=|||||||| targets:517   CCAUCGAAAGAUUUGUCUCGUA   538 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-308-F02, full insert sequence	NA	coding protein	psRNATarget
AK058355.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   ***||=|||||||=|||||||| targets:595   CCAUCGAAAGAUUUGUCUCGUA   616 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-014-E11, full insert sequence	NA	coding protein	psRNATarget
XM_015769654.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   ***||=|||||||=|||||||| targets:3849   CCAUCGAAAGAUUUGUCUCGUA   3870 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ABC transporter G family member 31 (LOC4323865), mRNA	ABC transporter G family member 31(LOC4323865)	coding protein	psRNATarget
AK288868.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =||||||*||||||||||||*| targets:4758   GGCUCAAUAGAUUCGUCUCGCA   4779 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
AK288230.1	ncRNA:22   UCGAGUUUUCUAAGCAGAGCAU   1   =|||*|||||||||||||||*| targets:5928   GGCUGAAAAGAUUCGUCUCGCA   5949 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence	NA	coding protein	psRNATarget
XM_015760824.1	ncRNA:22   UC--GAGUUUUCUAAGCAGAGCAU   1   ||--=|*||||||||=|||||||| targets:801   AGGAUUAAAAAGAUUUGUCUCGUA   824 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278722 (LOC107278722), mRNA	uncharacterized LOC107278722(LOC107278722)	coding protein	psRNATarget