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BaseInfo

ncRNA ID	novel_osa_miR3341
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:35357335-35357383 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	1 - AUUACUCCCUUUGUCCCAUAAUAU - 24
Stem-loop(if miRNA)	--   U          A          AUU UGGGACGGAG GAGUAGUA   ||| |||||||||| |||||||C   UAA ACCCUGUUUC CUCAUUAU UA   U          C
Stem-loop sequence	AUUUUGGGACGGAGAGAGUAGUACUAUUACUCCCUUUGUCCCAUAAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015780608.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   ||||||||||||=||||||||||* targets:1822   AUAUUAUGGGACGAAGGGAGUAAA   1845 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK073714.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2254   AUAUUUUGGGACAAAGGGAGUAAU   2277 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033055I03, full insert sequence	NA	coding protein	psRNATarget
XM_015789381.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2260   AUAUUUUGGGACAAAGGGAGUAAU   2283 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X6, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
XM_015789379.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2264   AUAUUUUGGGACAAAGGGAGUAAU   2287 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X4, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
XM_015789383.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2271   AUAUUUUGGGACAAAGGGAGUAAU   2294 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X8, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
XM_015789382.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2297   AUAUUUUGGGACAAAGGGAGUAAU   2320 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X7, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
XM_015789376.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2303   AUAUUUUGGGACAAAGGGAGUAAU   2326 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X1, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
XM_015789377.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2312   AUAUUUUGGGACAAAGGGAGUAAU   2335 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X2, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
XM_015789378.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2321   AUAUUUUGGGACAAAGGGAGUAAU   2344 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X3, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
XM_015789380.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   |||||*|||||||||||||||||| targets:2325   AUAUUUUGGGACAAAGGGAGUAAU   2348 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342282 (LOC4342282), transcript variant X5, mRNA	uncharacterized LOC4342282(LOC4342282)	coding protein	psRNATarget
CT836297.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   *|*||=||||||=||||||||||| targets:399   UUUUUGUGGGACGAAGGGAGUAAU   422 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN016N15, full insert sequence	NA	coding protein	psRNATarget
XM_015787859.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   *|*||=||||||=||||||||||| targets:1355   UUUUUGUGGGACGAAGGGAGUAAU   1378 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group (S)-coclaurine N-methyltransferase (LOC4341361), mRNA	(S)-coclaurine N-methyltransferase(LOC4341361)	coding protein	psRNATarget
AK070212.1	ncRNA:24   UAUAAUACCCUGUUUCCCUCAUUA   1   *||*||||||||||||||||||*| targets:2326   UUAAUAUGGGACAAAGGGAGUACU   2349 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget