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BaseInfo

ncRNA ID novel_osa_miR3340
Species Oryza sativa
Class miRNA
Genome position Chr2:23770017-23770073 [+]
Reference genome IRGSP-1.0
Source SRR2040388
Length 24
Mature sequence(if miRNA) 34 - CUAGAUCCAUUGGCAUCAAUAUGA - 57
Stem-loop(if miRNA) --        A      A        AG
  AUAUUGAU CUAAUG AUCUAGAU  A
  |||||||| |||||| ||||||||  U
  UAUAACUA GGUUAC UAGAUCUG  A
AG        C      C        AU
Stem-loop sequence AUAUUGAUACUAAUGAAUCUAGAUAGAUAUAGUCUAGAUCCAUUGGCAUCAAUAUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK120368.1
ncRNA:24   AGUAUAACUACGGUUACCUAGAUC   1
  *||-=|||||||||||||=||||*
targets:3559   CCA-GUUGAUGCCAAUGGGUCUAC   3581

2.5 Oryza sativa Japonica Group cDNA clone:J013070H20, full insert sequence NA coding protein psRNATarget
AK120368.1
ncRNA:24   AGUAUAACUACGGUUACCUAGAUC   1
  *||-=|||||||||||||=||||*
targets:3680   CCA-GUUGAUGCCAAUGGGUCUAC   3702

2.5 Oryza sativa Japonica Group cDNA clone:J013070H20, full insert sequence NA coding protein psRNATarget