Search result

BaseInfo

ncRNA ID	novel_osa_miR3338
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:16050285-16050390 [+]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	83 - GUUGCGAGAUGUAGAAGUUAAAUU - 106
Stem-loop(if miRNA)	--UUC                    -      C     U       AA  UAC      AACUUCUACAUUUUGCAAUG AAAAAA AAAUU GACUGUG  UA   G      |||||||||||||||||||| |||||| ||||| |||||||  ||   U      UUGAAGAUGUAGAGCGUUGC UUUUUU UUUAA UUGAUAU  AU   U UUAAA                    C      A     U       CG  CAA
Stem-loop sequence	UUCAACUUCUACAUUUUGCAAUGAAAAAACAAAUUUGACUGUGAAUAUACGUUAACUAGCUAUAGUUUAAUUUAUUUUUUCCGUUGCGAGAUGUAGAAGUUAAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015792915.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   |||||||||||||||||||||||| targets:1889   AAUUUAACUUCUACAUCUCGCAAC   1912 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase 89B1 (LOC4345896), transcript variant X1, mRNA	UDP-glycosyltransferase 89B1(LOC4345896)	coding protein	psRNATarget
HI404353.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||||*||||||||=|||||||||| targets:32   AAUUCAACUUCUAUAUCUCGCAAC   55 Target Full Sequence	1.5	Sequence 2478 from Patent EP2074227	NA	coding protein	psRNATarget
JB164814.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||||*||||||||=|||||||||| targets:32   AAUUCAACUUCUAUAUCUCGCAAC   55 Target Full Sequence	1.5	Sequence 2478 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236483.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||||*||||||||=|||||||||| targets:32   AAUUCAACUUCUAUAUCUCGCAAC   55 Target Full Sequence	1.5	Sequence 2478 from Patent EP2985353	NA	coding protein	psRNATarget
JB164690.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||||*||||||||||||||*|||| targets:32   AAUUCAACUUCUACAUCUCACAAC   55 Target Full Sequence	1.5	Sequence 2354 from Patent EP2559767	NA	coding protein	psRNATarget
HI404229.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||||*||||||||||||||*|||| targets:32   AAUUCAACUUCUACAUCUCACAAC   55 Target Full Sequence	1.5	Sequence 2354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236359.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||||*||||||||||||||*|||| targets:32   AAUUCAACUUCUACAUCUCACAAC   55 Target Full Sequence	1.5	Sequence 2354 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015791653.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||*|*||=||||||||||=||||| targets:620   AAAUCAAUUUCUACAUCUUGCAAC   643 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group FAD-dependent urate hydroxylase (LOC4343274), transcript variant X1, mRNA	FAD-dependent urate hydroxylase(LOC4343274)	coding protein	psRNATarget
XM_015791654.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   ||*|*||=||||||||||=||||| targets:620   AAAUCAAUUUCUACAUCUUGCAAC   643 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group FAD-dependent urate hydroxylase (LOC4343274), transcript variant X2, mRNA	FAD-dependent urate hydroxylase(LOC4343274)	coding protein	psRNATarget
XM_015794221.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   |*****||||||||||||=||||| targets:1276   ACCGCUACUUCUACAUCUUGCAAC   1299 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0481 protein At3g47200 (LOC4344546), mRNA	UPF0481 protein At3g47200(LOC4344546)	coding protein	psRNATarget
AK111473.1	ncRNA:24   UUAAAUUGAAGAUGUAGAGCGUUG   1   |*****||||||||||||=||||| targets:1282   ACCGCUACUUCUACAUCUUGCAAC   1305 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F03, full insert sequence	NA	coding protein	psRNATarget