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BaseInfo

ncRNA ID novel_osa_miR3334
Species Oryza sativa
Class miRNA
Genome position Chr1:26681496-26681655 [-]
Reference genome IRGSP-1.0
Source SRR1555747;SRR1556020
Length 24
Mature sequence(if miRNA) 137 - AGUACAUGUUUGACCGUUCGUUUU - 160
Stem-loop(if miRNA) --    CA                          -------------------------UAAU   UGAAAUAUGUAAAACUAUAUGUGUAC
  AGUA  UGUUUGACCGUUCGUUUUAUUUAAAA                             UUG                          A
  ||||  ||||||||||||||||||||||||||                             |||                          U
  UCAU  ACAAACUGGUAAGCAGAAUAAGUUUU                             UAG                          G
AA    AC                          UUUUAAAUUCAUUAAUAAAAAAAAAGAUA   UAAACUAAGUAACAAUUUAUAUGAUA
Stem-loop sequence AGUACAUGUUUGACCGUUCGUUUUAUUUAAAAUAAUUUGUGAAAUAUGUAAAACUAUAUGUGUACAUGAUAGUAUAUUUAACAAUGAAUCAAAUGAUAUAGAAAAAAAAAUAAUUACUUAAAUUUUUUUUGAAUAAGACGAAUGGUCAAACACAUACUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288135.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:545   AAGACGAACGGUCAAACAUGUGCU   568

1.5 Oryza sativa Japonica Group cDNA, clone: J080305D01, full insert sequence NA coding protein psRNATarget
CT837692.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:758   AAGACGAACGGUCAAACAUGUGCU   781

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA118M10, full insert sequence NA coding protein psRNATarget
CT828194.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:908   AAGACGAACGGUCAAACAUGUGCU   931

1.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124P14, full insert sequence NA coding protein psRNATarget
XM_015786076.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1612   AAGACGAACGGUCAAACAUGUGCU   1635

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X8, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786072.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1661   AAGACGAACGGUCAAACAUGUGCU   1684

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X4, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786077.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1737   AAGACGAACGGUCAAACAUGUGCU   1760

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X9, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786075.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1744   AAGACGAACGGUCAAACAUGUGCU   1767

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X7, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786074.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1744   AAGACGAACGGUCAAACAUGUGCU   1767

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X6, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786073.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1748   AAGACGAACGGUCAAACAUGUGCU   1771

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X5, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786070.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1754   AAGACGAACGGUCAAACAUGUGCU   1777

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X2, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
AK288811.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||||||||=||||||||||||=||
targets:1888   AAAACGAAUGGUCAAACAUGUGCU   1911

2.5 Oryza sativa Japonica Group cDNA, clone: J090072B06, full insert sequence NA coding protein psRNATarget
AK243582.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1179   AAGACGAACGGUCAAACAUGUGCU   1202

1.5 Oryza sativa Japonica Group cDNA, clone: J100082N18, full insert sequence NA coding protein psRNATarget
XM_015786071.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1865   AAGACGAACGGUCAAACAUGUGCU   1888

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X3, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786068.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1892   AAGACGAACGGUCAAACAUGUGCU   1915

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X1, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
XM_015786078.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1975   AAGACGAACGGUCAAACAUGUGCU   1998

1.5 PREDICTED: Oryza sativa Japonica Group UDP-glycosyltransferase TURAN (LOC4341323), transcript variant X10, mRNA UDP-glycosyltransferase TURAN(LOC4341323) coding protein psRNATarget
AK288537.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1221   AAGACGAACGGUCAAACAUGUGCU   1244

1.5 Oryza sativa Japonica Group cDNA, clone: J090045J06, full insert sequence NA coding protein psRNATarget
AK065848.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||||||||=||||||||||||=||
targets:1310   AAAACGAAUGGUCAAACAUGUGCU   1333

2.5 Oryza sativa Japonica Group cDNA clone:J013041B11, full insert sequence NA coding protein psRNATarget
AK073459.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:1018   AAGACGAACGGUCAAACAUGUGCU   1041

1.5 Oryza sativa Japonica Group cDNA clone:J033040L10, full insert sequence NA coding protein psRNATarget
XM_015795807.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||||||||||||||||=||
targets:3283   AAGACGAACGGUCAAACAUGUGCU   3306

1.5 PREDICTED: Oryza sativa Japonica Group mediator of RNA polymerase II transcription subunit 20a (LOC4347187), transcript variant X1, mRNA mediator of RNA polymerase II transcription subunit 20a(LOC4347187) coding protein psRNATarget
AK242434.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=|=|||=|||||||||||||||
targets:503   AAGAUGAAUGGUCAAACAUGUACU   526

1.0 Oryza sativa Japonica Group cDNA, clone: J080093A09, full insert sequence NA coding protein psRNATarget
CT837865.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||=|||||||||||||=||
targets:707   AAGACGAGCGGUCAAACAUGUGCU   730

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI023G22, full insert sequence NA coding protein psRNATarget
CT837864.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||=|||||||||||||=||
targets:708   AAGACGAGCGGUCAAACAUGUGCU   731

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022P04, full insert sequence NA coding protein psRNATarget
CT837863.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||||=|||||||||||||=||
targets:708   AAGACGAGCGGUCAAACAUGUGCU   731

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015M23, full insert sequence NA coding protein psRNATarget
CT829822.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=|||||=|||||||=|||||||
targets:893   AAGACGAAUGGUCAAAUAUGUACU   916

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B24, full insert sequence NA coding protein psRNATarget
AK070761.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=|||||=||||||||||||=||
targets:1689   AAGACGAAUGGUCAAACAUGUGCU   1712

2.5 Oryza sativa Japonica Group cDNA clone:J023067D20, full insert sequence NA coding protein psRNATarget
AK288230.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=|=||||||||||||||||=||
targets:2961   AAGAUGAACGGUCAAACAUGUGCU   2984

1.5 Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence NA coding protein psRNATarget
AK243013.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||||||||=|||||||||*|||||
targets:604   AAAACGAAUGGUCAAACACGUACU   627

2.5 Oryza sativa Japonica Group cDNA, clone: J090098F15, full insert sequence NA coding protein psRNATarget
XM_015757375.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  *|=|=||||||||||||||||=||
targets:1441   CAGAUGAACGGUCAAACAUGUGCU   1464

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272245 (LOC9272245), transcript variant X1, mRNA uncharacterized LOC9272245(LOC9272245) coding protein psRNATarget
AK067104.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||*|||||||||||||||=||
targets:913   AAGACAAACGGUCAAACAUGUGCU   936

2.5 Oryza sativa Japonica Group cDNA clone:J013096C13, full insert sequence NA coding protein psRNATarget
XM_015769093.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=||*|||||||||||||||=||
targets:906   AAGACAAACGGUCAAACAUGUGCU   929

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4328591 (LOC4328591), mRNA uncharacterized LOC4328591(LOC4328591) coding protein psRNATarget
XM_015769926.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=|||||=|||||||||*|||||
targets:2608   AAGACGAAUGGUCAAACACGUACU   2631

2.5 PREDICTED: Oryza sativa Japonica Group metal-nicotianamine transporter YSL2 (LOC4330161), transcript variant X3, mRNA metal-nicotianamine transporter YSL2(LOC4330161) coding protein psRNATarget
XM_015769924.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=|||||=|||||||||*|||||
targets:2645   AAGACGAAUGGUCAAACACGUACU   2668

2.5 PREDICTED: Oryza sativa Japonica Group metal-nicotianamine transporter YSL2 (LOC4330161), transcript variant X1, mRNA metal-nicotianamine transporter YSL2(LOC4330161) coding protein psRNATarget
XM_015790302.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  ||=|||||=*||||||||||||||
targets:48   AAGACGAAUAGUCAAACAUGUACU   71

2.0 PREDICTED: Oryza sativa Japonica Group flavin-containing monooxygenase FMO GS-OX-like 8 (LOC4342236), mRNA flavin-containing monooxygenase FMO GS-OX-like 8(LOC4342236) coding protein psRNATarget
AK289089.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  |==|=|||=|||||||||||||=|
targets:2757   AGGAUGAAUGGUCAAACAUGUAUU   2780

2.5 Oryza sativa Japonica Group cDNA, clone: J090095N08, full insert sequence NA coding protein psRNATarget
XM_015790883.1
ncRNA:24   UUUUGCUUGCCAGUUUGUACAUGA   1
  |==|=|||=|||||||||||||=|
targets:3218   AGGAUGAAUGGUCAAACAUGUAUU   3241

2.5 PREDICTED: Oryza sativa Japonica Group 7-deoxyloganetic acid glucosyltransferase (LOC9267967), mRNA 7-deoxyloganetic acid glucosyltransferase(LOC9267967) coding protein psRNATarget
AK243595.1
ncRNA:24   UUU----UGCUUGCCAGUUUGUACAUGA   1
  |||----||||||*|||||||||||=||
targets:1050   AAAUACGACGAACAGUCAAACAUGUGCU   1077

2.5 Oryza sativa Japonica Group cDNA, clone: J100084C06, full insert sequence NA coding protein psRNATarget
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