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BaseInfo

ncRNA ID	novel_osa_miR3333
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:13612592-13612697 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	1 - AAUAUAGGAAAUACUAGAAUGACU - 24
Stem-loop(if miRNA)	--         C      CAC                           CAUAU   UCAUUCUAG AUUUCC   AUUCAUAUUGAUAUUAAUGAAUCUAGA     A   ||||||||| ||||||   |||||||||||||||||||||||||||   AGUAAGAUC UAAAGG   UAAGUAUAAUUAUAAUUACUUAGAUUU     U UC         A      AUA                           AUCUA
Stem-loop sequence	UCAUUCUAGCAUUUCCCACAUUCAUAUUGAUAUUAAUGAAUCUAGACAUAUAUAUCUAUUUAGAUUCAUUAAUAUUAAUAUGAAUAUAGGAAAUACUAGAAUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015764199.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:3716   AGUCAUUCUAUUAUUUCCUAUAUU   3739 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X2, mRNA	uncharacterized LOC4351993(LOC4351993)	coding protein	psRNATarget
XM_015764200.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:3417   AGUCAUUCUAUUAUUUCCUAUAUU   3440 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X3, mRNA	uncharacterized LOC4351993(LOC4351993)	coding protein	psRNATarget
XM_015764201.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:3415   AGUCAUUCUAUUAUUUCCUAUAUU   3438 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X4, mRNA	uncharacterized LOC4351993(LOC4351993)	coding protein	psRNATarget
AK103843.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:3418   AGUCAUUCUAUUAUUUCCUAUAUU   3441 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033148J12, full insert sequence	NA	coding protein	psRNATarget
AK121318.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:3309   AGUCAUUCUAUUAUUUCCUAUAUU   3332 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J023113P04, full insert sequence	NA	coding protein	psRNATarget
XM_015764198.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:3173   AGUCAUUCUAUUAUUUCCUAUAUU   3196 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351993 (LOC4351993), transcript variant X1, mRNA	uncharacterized LOC4351993(LOC4351993)	coding protein	psRNATarget
XM_015778310.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:2115   AGUCAUUCUAUUAUUUCCUAUAUU   2138 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
AK072022.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||*||||||||||||| targets:2177   AGUCAUUCUAUUAUUUCCUAUAUU   2200 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013105F11, full insert sequence	NA	coding protein	psRNATarget
AK241705.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   |||||||=|||*|||||||||||| targets:3980   AGUCAUUUUAGCAUUUCCUAUAUU   4003 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
AK100834.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   |||||||=||||||||||*||||| targets:1543   AGUCAUUUUAGUAUUUCCCAUAUU   1566 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023123D17, full insert sequence	NA	coding protein	psRNATarget
XM_015788194.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||**|||||||||||| targets:1758   AGUCAUUCUACCAUUUCCUAUAUU   1781 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X1, mRNA	embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015)	coding protein	psRNATarget
XM_015788196.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||**|||||||||||| targets:1739   AGUCAUUCUACCAUUUCCUAUAUU   1762 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X3, mRNA	embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015)	coding protein	psRNATarget
XM_015788195.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||||||||||**|||||||||||| targets:1728   AGUCAUUCUACCAUUUCCUAUAUU   1751 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (LOC4341015), transcript variant X2, mRNA	embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein(LOC4341015)	coding protein	psRNATarget
CT835788.1	ncRNA:24   UCAGUAAGAUCAUAAAGGAUAUAA   1   ||*|*||||||||||*|||||||| targets:1187   AGACUUUCUAGUAUUGCCUAUAUU   1210 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN020A08, full insert sequence	NA	coding protein	psRNATarget