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BaseInfo

ncRNA ID	novel_osa_miR3330
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:25719704-25719816 [-]
Reference genome	IRGSP-1.0
Source	SRR2040388
Length	24
Mature sequence(if miRNA)	90 - AUCGCGAGACGAAUCUUUUGAGCU - 113
Stem-loop(if miRNA)	--AUC             U     CU      CG  AUGAUUUGAC    UGGUGCUAUA      GCGAGACGAAUCU UUGAG  UAAUUA  CC          AAUG          U      ||||||||||||| |||||  ||||||  ||          ||||          U      CGCUCUGCUUAGA AAUUC  AUUAAU  GG          GUAA          A UUUGA             U     AG      UA  --------CA    UCGUUUACAA
Stem-loop sequence	AUCGCGAGACGAAUCUUUUGAGCUUAAUUACGCCAUGAUUUGACAAUGUGGUGCUAUAUUAAACAUUUGCUAAUGACGGAUUAAUUAGACUUAAUAGAUUCGUCUCGCAGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK103318.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||||| targets:1156   GGCUCAAAAGAUUCGUCUCGCGAU   1179 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J033125I08, full insert sequence	NA	coding protein	psRNATarget
AK101179.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   ||||=||||||||||||||||||| targets:2727   AGCUUAAAAGAUUCGUCUCGCGAU   2750 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J033029D23, full insert sequence	NA	coding protein	psRNATarget
XM_015761412.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||||| targets:634   GGCUCAAAAGAUUCGUCUCGCGAU   657 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group nucleobase-ascorbate transporter 2 (LOC4325616), mRNA	nucleobase-ascorbate transporter 2(LOC4325616)	coding protein	psRNATarget
AK067512.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||||| targets:1190   GGCUCAAAAGAUUCGUCUCGCGAU   1213 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013109G08, full insert sequence	NA	coding protein	psRNATarget
AK103177.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||||||||||||||||||* targets:1319   AGACUCAAAAGAUUCGUCUCGCGAA   1343 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033121H17, full insert sequence	NA	coding protein	psRNATarget
AK101996.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:1700   GGCUCAAAAGAUUCGUCUCGCAAU   1723 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033079J12, full insert sequence	NA	coding protein	psRNATarget
XM_015788312.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||||||||||||||||||* targets:1675   AGACUCAAAAGAUUCGUCUCGCGAA   1699 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group serine/arginine-rich splicing factor SR45a (LOC4342102), transcript variant X1, mRNA	serine/arginine-rich splicing factor SR45a(LOC4342102)	coding protein	psRNATarget
XM_015772097.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:1918   GGCUCAAAAGAUUCGUCUCGCAAU   1941 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group cinnamate beta-D-glucosyltransferase (LOC4328553), mRNA	cinnamate beta-D-glucosyltransferase(LOC4328553)	coding protein	psRNATarget
AK287827.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||||||||||||||||||* targets:2076   AGACUCAAAAGAUUCGUCUCGCGAA   2100 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065185G19, full insert sequence	NA	coding protein	psRNATarget
AK073850.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||||||||||||||||||* targets:1658   AGACUCAAAAGAUUCGUCUCGCGAA   1682 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J033073F11, full insert sequence	NA	coding protein	psRNATarget
AK070572.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:2216   GGCUCAAAAGAUUCGUCUCGCAAU   2239 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023055P17, full insert sequence	NA	coding protein	psRNATarget
AK120219.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||||||||||||*||||||||| targets:613   GGCUCAAAAGAUUCAUCUCGCGAU   636 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013041B17, full insert sequence	NA	coding protein	psRNATarget
AK288948.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:530   GGCUCAAAAGAUUCGUCUCGCAAU   553 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090083I09, full insert sequence	NA	coding protein	psRNATarget
AK120234.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:2508   GGCUCAAAAGAUUCGUCUCGCAAU   2531 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013043L17, full insert sequence	NA	coding protein	psRNATarget
AK287930.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:2459   GGCUCAAAAGAUUCGUCUCGCAAU   2482 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J065218P20, full insert sequence	NA	coding protein	psRNATarget
XM_015769710.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:2939   GGCUCAAAAGAUUCGUCUCGCAAU   2962 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X2, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget
XM_015769709.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|| targets:3073   GGCUCAAAAGAUUCGUCUCGCAAU   3096 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4328990), transcript variant X1, mRNA	disease resistance protein RPP13(LOC4328990)	coding protein	psRNATarget
CT831461.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-||=|||||||||||||||||=| targets:436   AGUCUUAAAAGAUUCGUCUCGCGGU   460 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110A21, full insert sequence	NA	coding protein	psRNATarget
JB164964.1	ncRNA:24   UCG-AGUUUUCUAAGCAGAGCGCUA   1   |||-||||||||||||||||||*|| targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115 Target Full Sequence	1.5	Sequence 2628 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236633.1	ncRNA:24   UCG-AGUUUUCUAAGCAGAGCGCUA   1   |||-||||||||||||||||||*|| targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115 Target Full Sequence	1.5	Sequence 2628 from Patent EP2985353	NA	coding protein	psRNATarget
HI404503.1	ncRNA:24   UCG-AGUUUUCUAAGCAGAGCGCUA   1   |||-||||||||||||||||||*|| targets:91   AGCCUCAAAAGAUUCGUCUCGCAAU   115 Target Full Sequence	1.5	Sequence 2628 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015776798.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||=||||||||||||||||*|| targets:1991   GGCUUAAAAGAUUCGUCUCGCUAU   2014 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group U11/U12 small nuclear ribonucleoprotein 65 kDa protein (LOC4332713), transcript variant X1, mRNA	U11/U12 small nuclear ribonucleoprotein 65 kDa protein(LOC4332713)	coding protein	psRNATarget
AK102878.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||||||||||||||||*|| targets:2132   AGACUCAAAAGAUUCGUCUCGCAAU   2156 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033112G02, full insert sequence	NA	coding protein	psRNATarget
XM_015785585.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||||||||||||||||*|| targets:2203   AGACUCAAAAGAUUCGUCUCGCAAU   2227 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X2, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
XM_015785584.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||||||||||||||||*|| targets:2336   AGACUCAAAAGAUUCGUCUCGCAAU   2360 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial (LOC4341876), transcript variant X1, mRNA	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial(LOC4341876)	coding protein	psRNATarget
AK288820.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|*|||||||||||||||||||| targets:3104   AGACACAAAAGAUUCGUCUCGCGAU   3128 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090073D04, full insert sequence	NA	coding protein	psRNATarget
CT833304.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||*|||||||||||||||* targets:1325   GGCUCAAUAGAUUCGUCUCGCGAA   1348 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN010D02, full insert sequence	NA	coding protein	psRNATarget
AK120728.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||*|||||||||||||||* targets:1492   GGCUCAAUAGAUUCGUCUCGCGAA   1515 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023003A06, full insert sequence	NA	coding protein	psRNATarget
AK100421.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||*|||||||||||||||* targets:1520   GGCUCAAUAGAUUCGUCUCGCGAA   1543 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023088B04, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||||||||||||||||*|* targets:550   GGCUCAAAAGAUUCGUCUCGCAAA   573 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||=||*|*|||||||||||||| targets:2454   GGCUUAAUAAAUUCGUCUCGCGAU   2477 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288873.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =||||||*|||||||||||||||* targets:5619   GGCUCAAUAGAUUCGUCUCGCGAA   5642 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078I24, full insert sequence	NA	coding protein	psRNATarget
XM_015781196.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-||=||||||||=|||||||||* targets:2153   AGACUUAAAAGAUUUGUCUCGCGAA   2177 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group GATA transcription factor 6 (LOC4336532), mRNA	GATA transcription factor 6(LOC4336532)	coding protein	psRNATarget
AK288942.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||==|||||||||||||||*|| targets:3372   GGCUUGAAAGAUUCGUCUCGCAAU   3395 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence	NA	coding protein	psRNATarget
XM_015778499.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-||=|||||||||*||||||||| targets:24   AGACUUAAAAGAUUCAUCUCGCGAU   48 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group LRR receptor-like serine/threonine-protein kinase ERECTA (LOC4334979), transcript variant X3, mRNA	LRR receptor-like serine/threonine-protein kinase ERECTA(LOC4334979)	coding protein	psRNATarget
AK099773.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-||=|||||||||*||||||||| targets:721   AGACUUAAAAGAUUCAUCUCGCGAU   745 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013095E04, full insert sequence	NA	coding protein	psRNATarget
AK065510.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-||=|||||||||*||||||||| targets:791   AGACUUAAAAGAUUCAUCUCGCGAU   815 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013030L03, full insert sequence	NA	coding protein	psRNATarget
XM_015794883.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||=||*|||||||||||||||* targets:93   GGCUUAAUAGAUUCGUCUCGCGAA   116 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107282066 (LOC107282066), mRNA	uncharacterized LOC107282066(LOC107282066)	coding protein	psRNATarget
AK289029.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||=||||||||||||||||*|* targets:2220   GGCUUAAAAGAUUCGUCUCGCAAA   2243 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090090O22, full insert sequence	NA	coding protein	psRNATarget
AK064127.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||||||||*|||*||||||||| targets:124   GGCUCAAAAGUUUCAUCUCGCGAU   147 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-102-E01, full insert sequence	NA	coding protein	psRNATarget
AK101033.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||*|||||||||||||||* targets:1925   AGACUCAAUAGAUUCGUCUCGCGAA   1949 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023150N19, full insert sequence	NA	coding protein	psRNATarget
XM_015767222.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||*|||||||||||||||* targets:1924   AGACUCAAUAGAUUCGUCUCGCGAA   1948 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X2, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
XM_015767213.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-|||||*|||||||||||||||* targets:1942   AGACUCAAUAGAUUCGUCUCGCGAA   1966 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group beclin-1-like protein (LOC4324394), transcript variant X1, mRNA	beclin-1-like protein(LOC4324394)	coding protein	psRNATarget
AK288279.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   ****||||||||||||||=||||| targets:5697   UAGGCAAAAGAUUCGUCUUGCGAU   5720 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090017N13, full insert sequence	NA	coding protein	psRNATarget
AK072161.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-||=||||||||||||||||*|* targets:1116   AGACUUAAAAGAUUCGUCUCGCAAA   1140 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013132P06, full insert sequence	NA	coding protein	psRNATarget
AK288230.1	ncRNA:24   UCGAGUUUUCUAAGCAGAGCGCUA   1   =|||*||||||||||||||||*|* targets:5928   GGCUGAAAAGAUUCGUCUCGCAAA   5951 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012M14, full insert sequence	NA	coding protein	psRNATarget
AK288241.1	ncRNA:24   UC-GAGUUUUCUAAGCAGAGCGCUA   1   ||-||-||||*|||||||||||||* targets:673   AGACU-AAAAAAUUCGUCUCGCGAA   696 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090013L13, full insert sequence	NA	coding protein	psRNATarget